View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14403_low_2 (Length: 627)
Name: NF14403_low_2
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 17 - 627
Target Start/End: Original strand, 49870684 - 49871293
Alignment:
| Q |
17 |
catttcactctaagattagtggcagcaccatcacccttgttgttgtattccaaataagtgcatgtctccttgaaaagatttcccatccatggcatataac |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49870684 |
catttcactctaagattagtggcagcaccagcacccttgttgttgtattccaaataagtgcatgtctccttgaaaagatttcccatccatggcatgtaac |
49870783 |
T |
|
| Q |
117 |
cctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttcccaaataagctatcttgggttgcatggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870784 |
cctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttcccaaataagctatcttgggttgcatggt |
49870883 |
T |
|
| Q |
217 |
aagtacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcctcctgctgtcaccatgcattgttga |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870884 |
aagaacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcctcctgctgtcaccatgcattgttga |
49870983 |
T |
|
| Q |
317 |
gttgccattggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggt |
416 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870984 |
gttgccattggttttctaacgatgagtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggt |
49871083 |
T |
|
| Q |
417 |
agaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871084 |
agaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccactgc |
49871183 |
T |
|
| Q |
517 |
ttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaaattaataacaaatcgatcatta |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49871184 |
ttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtc-aattaataacaaatcgatcatta |
49871282 |
T |
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| Q |
617 |
caacttacaac |
627 |
Q |
| |
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||||||||||| |
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| T |
49871283 |
caacttacaac |
49871293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 17 - 605
Target Start/End: Original strand, 49864747 - 49865334
Alignment:
| Q |
17 |
catttcactctaagattagtggcagcaccatcacccttgttgttgtattccaaataagtgcatgtctccttgaaaagatttcccatccatggcatataac |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49864747 |
catttcactctaagattagtggcagcaccagcacccttgttgttgtattccaaataagtgcatgtctccttgaaaagatttcccatccatggcatataac |
49864846 |
T |
|
| Q |
117 |
cctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttcccaaataagctatcttgggttgcatggt |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49864847 |
cctctggtacaaagaggccatcaatgagagaatccacgataacaaccttggagaaatttctccatggtcttcccaaataagctatcttgggttgcatggt |
49864946 |
T |
|
| Q |
217 |
aagtacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcctcctgctgtcaccatgcattgttga |
316 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49864947 |
aagaacttcgggttccccggtgaaatgacagttttggaaaacaagggcggatacactgtcaactttggttcttcctcctgctgtcaccatgcattgttga |
49865046 |
T |
|
| Q |
317 |
gttgccattggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||| |
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| T |
49865047 |
tttgccattggttttctaacgacgagcttgcagttttggaaaactccaacagcatcaccaaagacaaagtcaattgttccgctaatagtgcagtcgcggt |
49865146 |
T |
|
| Q |
417 |
agaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgc |
516 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49865147 |
agaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccactgc |
49865246 |
T |
|
| Q |
517 |
ttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaaattaataacaa |
605 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| | |||||||||||| |
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| T |
49865247 |
ttggtgctttgcggcaccggctgagttctcaaatccgacgttcaaggcggtgaaatgggcagagttcacacctg-ccaattaataacaa |
49865334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 344 - 521
Target Start/End: Complemental strand, 13967668 - 13967491
Alignment:
| Q |
344 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtaga |
443 |
Q |
| |
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||||| |||||||||||||||| || || ||||| |||||||||||||| || | |||| |||||| ||||||||||| | || |||||| ||||| |
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| T |
13967668 |
ttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattggacgtaga |
13967569 |
T |
|
| Q |
444 |
gtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgat |
521 |
Q |
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|||| |||||| |||||| ||||| ||||||| ||| | ||||| ||||||||||| |||||||| |||||||||| |
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| T |
13967568 |
gtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgat |
13967491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 325 - 522
Target Start/End: Complemental strand, 13960523 - 13960326
Alignment:
| Q |
325 |
tggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgt |
424 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||| ||| || ||||| ||| | ||||||||| || | ||| ||||||| ||||||||||| |
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| T |
13960523 |
tggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattga |
13960424 |
T |
|
| Q |
425 |
cttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
522 |
Q |
| |
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| || ||||| | | ||||||| |||||||||| | |||| |||||||||||| | |||||||||||||||||| ||||| || ||||||||||| |
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| T |
13960423 |
cgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
13960326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 407 - 459
Target Start/End: Original strand, 19394572 - 19394624
Alignment:
| Q |
407 |
cagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaacc |
459 |
Q |
| |
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|||||||||||||||||||| | || ||||| ||| ||||| ||||||||||| |
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| T |
19394572 |
cagtcgcggtagaattgtctgtgggtttgtgcgtatagtgtgtcttggtaacc |
19394624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 423
Target Start/End: Complemental strand, 37150693 - 37150614
Alignment:
| Q |
344 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
423 |
Q |
| |
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|||||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||||||| ||||||||||| |
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| T |
37150693 |
ttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattg |
37150614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 423
Target Start/End: Complemental strand, 37159518 - 37159439
Alignment:
| Q |
344 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
423 |
Q |
| |
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|||||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||||||| ||||||||||| |
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| T |
37159518 |
ttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattg |
37159439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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