View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14403_low_25 (Length: 220)

Name: NF14403_low_25
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14403_low_25
NF14403_low_25
[»] chr1 (14 HSPs)
chr1 (18-208)||(8861482-8861672)
chr1 (47-208)||(9085917-9086078)
chr1 (48-208)||(9069622-9069782)
chr1 (46-200)||(8978910-8979064)
chr1 (48-208)||(9125090-9125250)
chr1 (53-199)||(9337783-9337929)
chr1 (53-190)||(9364651-9364788)
chr1 (53-173)||(8927222-8927342)
chr1 (53-172)||(9236124-9236243)
chr1 (53-172)||(9377990-9378109)
chr1 (53-195)||(9242256-9242398)
chr1 (53-173)||(8939648-8939768)
chr1 (53-172)||(9300366-9300485)
chr1 (53-187)||(8962561-8962695)
[»] scaffold0690 (1 HSPs)
scaffold0690 (53-178)||(1872-1997)
[»] chr6 (4 HSPs)
chr6 (53-178)||(15910109-15910234)
chr6 (60-102)||(31145374-31145416)
chr6 (60-102)||(31171687-31171729)
chr6 (60-112)||(31201239-31201291)
[»] chr3 (1 HSPs)
chr3 (53-172)||(9171775-9171894)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 8861482 - 8861672
Alignment:
Q  18 tatagcacatgaaaagtttctgcaaacgtgtctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagag 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8861482 tatagcacatgaaaagtttctgcagacgtgtctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagag 8861581  T
Q  118 aaacattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttcccttagcagctgtcatggacacaacactaatattctt 208  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  8861582 acacattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttcccttagcagctgtcatggacacaacgctaagattctt 8861672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 9085917 - 9086078
Alignment:
Q  47 gtctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaact 146  Q
    |||||||||||| || || |||||||| |||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||| ||| | ||||    
T  9085917 gtctacattcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacattcccaaaatttcgtgacaaaact 9086016  T
Q  147 tcaggcgccatgtatcccaaggttcccttagcagctgtcatggacacaacactaatattctt 208  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  9086017 tcaggcgccatatatcccaaggttcccctagcagctgtcatggacactacactaatattctt 9086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 9069622 - 9069782
Alignment:
Q  48 tctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaactt 147  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||  || |  ||||    
T  9069622 tctacattctttcttcctccaaccatttctagcaacaacattccataactgtatatatcagacttaagagaaacatttccaaaatttcgagacactactt 9069721  T
Q  148 caggcgccatgtatcccaaggttcccttagcagctgtcatggacacaacactaatattctt 208  Q
    | || ||||| ||||||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  9069722 cgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattctt 9069782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 8978910 - 8979064
Alignment:
Q  46 tgtctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaac 145  Q
    |||||| |||||| || ||| ||||||||||||||||||||||||| || || |||||||| || |||||||| ||||| |||||||||||||| |||||    
T  8978910 tgtctatattcttccttcctgcaaccatttctagcaacaacattccatagctataaatatcagatttaagagacacattaccaaaatttcttgacagaac 8979009  T
Q  146 ttcaggcgccatgtatcccaaggttcccttagcagctgtcatggacacaacacta 200  Q
    |||||| ||||| ||||||||||| ||| |||| |||||||||||||| ||||||    
T  8979010 ttcaggtgccatatatcccaaggtacccctagccgctgtcatggacactacacta 8979064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 9125090 - 9125250
Alignment:
Q  48 tctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaactt 147  Q
    ||||||||||| |  |||||||||| ||| ||||||||||| || ||||| |||||||| |||||| |||||||||| |||||||||| ||| | |||||    
T  9125090 tctacattcttgcgtcctccaaccaattccagcaacaacatcccataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaactt 9125189  T
Q  148 caggcgccatgtatcccaaggttcccttagcagctgtcatggacacaacactaatattctt 208  Q
    |||| ||||| ||||||||||||||  |||| || |||||||| |||||||||| ||||||    
T  9125190 caggtgccatatatcccaaggttcctctagccgcagtcatggatacaacactaacattctt 9125250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 9337929 - 9337783
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| |||||||||||||| | ||| ||||| ||||||||||| ||||| ||||||  ||| ||||| ||||| |||||||| | |||||||||     
T  9337929 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9337830  T
Q  153 gccatgtatcccaaggttcccttagcagctgtcatggacacaacact 199  Q
    |||||||| || || ||||||||||| || |||||||| || |||||    
T  9337829 gccatgtagcctaatgttcccttagctgcagtcatggatacgacact 9337783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 9364788 - 9364651
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| |||||||||||||| | ||| ||||| ||||||||||| ||||| ||||||  ||| ||||| ||||| |||||||| | |||||||||     
T  9364788 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9364689  T
Q  153 gccatgtatcccaaggttcccttagcagctgtcatgga 190  Q
    |||||||| || || ||||||||||| || ||||||||    
T  9364688 gccatgtagcctaatgttcccttagctgcagtcatgga 9364651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 8927342 - 8927222
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||  ||| ||||||||||| ||||  || | |||||||||     
T  8927342 attctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8927243  T
Q  153 gccatgtatcccaaggttccc 173  Q
    |||||||| || || ||||||    
T  8927242 gccatgtaacctaatgttccc 8927222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 9236124 - 9236243
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| || |||||||| || ||||||||||| ||||| || |||||||| ||||||  ||||||||| || || ||||| || | |||||||||     
T  9236124 attctttcttccaccaaccatctcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggt 9236223  T
Q  153 gccatgtatcccaaggttcc 172  Q
    || |||||||||||||||||    
T  9236224 gcaatgtatcccaaggttcc 9236243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 9378109 - 9377990
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| ||||||||||| ||||||||||| |||||||| || |||||||| |||||   ||||||||| || || |||||||| | |||||||||     
T  9378109 attctttctacctccaaccatctctagcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggt 9378010  T
Q  153 gccatgtatcccaaggttcc 172  Q
    || ||||| ||||| |||||    
T  9378009 gcaatgtagcccaatgttcc 9377990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 9242256 - 9242398
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| ||||||||||| || | ||| ||||| ||||||||||| | ||| ||||||  ||| ||||| ||||||||||| || | |||||||||     
T  9242256 attctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 9242355  T
Q  153 gccatgtatcccaaggttcccttagcagctgtcatggacacaa 195  Q
    |||||||| || |  ||||||||||| || |||||||| ||||    
T  9242356 gccatgtagcctactgttcccttagccgcagtcatggatacaa 9242398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 8939768 - 8939648
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| ||||||||||| || |||| |||||| ||||| ||||| ||||| ||||||  ||| ||||||||||| ||||  || | |||||||||     
T  8939768 attctttcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8939669  T
Q  153 gccatgtatcccaaggttccc 173  Q
    |||||||| || || ||||||    
T  8939668 gccatgtaccctaaagttccc 8939648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 9300485 - 9300366
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    |||||| || || |||||||| || ||||||||||| || ||||| || ||||| ||||||  ||| ||||||||||| ||||| || | |||||| ||     
T  9300485 attcttccttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggt 9300386  T
Q  153 gccatgtatcccaaggttcc 172  Q
    ||||||||||| || |||||    
T  9300385 gccatgtatcctaatgttcc 9300366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 8962695 - 8962561
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| ||||| ||||| || |||| ||||||||| || ||||| ||||| || |||  ||| ||||||||||| ||||  || |  ||||||||     
T  8962695 attctttcttcctccgaccatctccagcagcaacattccatagctgtatatatcagatttataagagacattcccaaagtttcgagaaaatacttcaggt 8962596  T
Q  153 gccatgtatcccaaggttcccttagcagctgtcat 187  Q
    ||||||||||| || |||||| |||| || |||||    
T  8962595 gccatgtatcctaatgttcccctagccgcagtcat 8962561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 1997 - 1872
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| ||||||||||| || | ||| ||||| ||||||||||| ||||| ||||||  ||| ||||| ||||||||||| || | |||||||||     
T  1997 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 1898  T
Q  153 gccatgtatcccaaggttcccttagc 178  Q
    |||||||| || || |||||||||||    
T  1897 gccatgtagcctaatgttcccttagc 1872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 15910109 - 15910234
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| ||||||||||| || | ||| ||||| ||||||||||| ||||| ||||||  ||| ||||| ||||||||||| || | |||||||||     
T  15910109 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 15910208  T
Q  153 gccatgtatcccaaggttcccttagc 178  Q
    |||||||| || || |||||||||||    
T  15910209 gccatgtagcctaatgttcccttagc 15910234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 31145374 - 31145416
Alignment:
Q  60 ctccctccaaccatttctagcaacaacattccgtaactgtaaa 102  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||    
T  31145374 ctccctccaaccatttctagcaacatcattccataactataaa 31145416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 31171687 - 31171729
Alignment:
Q  60 ctccctccaaccatttctagcaacaacattccgtaactgtaaa 102  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||    
T  31171687 ctccctccaaccatttctagcaacatcattccataactataaa 31171729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 31201239 - 31201291
Alignment:
Q  60 ctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgactt 112  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||| ||| |||||    
T  31201239 ctccctccaaccatttccagcaacatcattccataactataaacatcggactt 31201291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 9171894 - 9171775
Alignment:
Q  53 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 152  Q
    ||||||||| |||||||| ||||| |  | |||||| || || || || ||||| ||||||  ||| ||||||||||||||||| || | |||||| ||     
T  9171894 attctttcttcctccaacaatttccaatagcaacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggt 9171795  T
Q  153 gccatgtatcccaaggttcc 172  Q
    ||||||||||| || |||||    
T  9171794 gccatgtatcctaatgttcc 9171775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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