View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14403_low_26 (Length: 211)

Name: NF14403_low_26
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14403_low_26
NF14403_low_26
[»] chr8 (7 HSPs)
chr8 (19-198)||(26537448-26537627)
chr8 (17-50)||(3762338-3762371)
chr8 (17-50)||(40971088-40971121)
chr8 (18-50)||(1981234-1981266)
chr8 (18-50)||(16729378-16729410)
chr8 (18-46)||(18326972-18327000)
chr8 (18-50)||(45117137-45117169)
[»] chr7 (4 HSPs)
chr7 (17-50)||(8389728-8389761)
chr7 (18-50)||(4539512-4539544)
chr7 (18-50)||(13753759-13753791)
chr7 (18-50)||(44733170-44733202)
[»] chr3 (3 HSPs)
chr3 (17-50)||(10994549-10994582)
chr3 (18-50)||(19156736-19156768)
chr3 (18-50)||(25071278-25071310)
[»] scaffold0601 (1 HSPs)
scaffold0601 (18-50)||(6428-6460)
[»] scaffold0308 (1 HSPs)
scaffold0308 (18-50)||(12518-12550)
[»] chr6 (3 HSPs)
chr6 (18-50)||(1603013-1603045)
chr6 (18-50)||(20990100-20990132)
chr6 (18-50)||(22012543-22012575)
[»] chr5 (3 HSPs)
chr5 (18-50)||(2676608-2676640)
chr5 (18-50)||(9409981-9410013)
chr5 (18-50)||(42879239-42879271)
[»] chr4 (3 HSPs)
chr4 (18-50)||(6262047-6262079)
chr4 (18-50)||(10095453-10095485)
chr4 (18-50)||(39480682-39480714)
[»] chr2 (4 HSPs)
chr2 (18-50)||(19685439-19685471)
chr2 (13-49)||(33015623-33015659)
chr2 (18-50)||(44314470-44314502)
chr2 (18-50)||(44322649-44322681)
[»] chr1 (3 HSPs)
chr1 (18-50)||(5049096-5049128)
chr1 (18-50)||(21906021-21906053)
chr1 (18-50)||(48596774-48596806)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 26537448 - 26537627
Alignment:
Q  19 agggccggccctagggcataggtcgcgagtgcaagcaaataaaatgtatctgatttaacctcatcgatcagtacattctttatgccatatctttgtagct 118  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  26537448 agggccggtcctagggcataggccgcgagtgcaaccaaataaaatgtatctgatttaacctcatcgatcagtacattcttcatgccatatctttgtaact 26537547  T
Q  119 atgtatctgcttttctcatatgttcgaagtaaataaagtctataaataatgtgaaatttccgcctctgccaatctgtgct 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26537548 atgtatctgcttttctcatatgttcgaagtaaatacagtctataaataatgtgaaatttccgcctctgccaatctgtgct 26537627  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 3762338 - 3762371
Alignment:
Q  17 tcagggccggccctagggcataggtcgcgagtgc 50  Q
    |||||||||||||||||||||||| |||||||||    
T  3762338 tcagggccggccctagggcataggccgcgagtgc 3762371  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 40971088 - 40971121
Alignment:
Q  17 tcagggccggccctagggcataggtcgcgagtgc 50  Q
    |||||||||||||||||||||||| |||||||||    
T  40971088 tcagggccggccctagggcataggccgcgagtgc 40971121  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 1981234 - 1981266
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  1981234 cagggccggccctagggcataggccgcgagtgc 1981266  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 16729378 - 16729410
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||||| |||||||    
T  16729378 cagggccggccctagggcataggtcacgagtgc 16729410  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 18326972 - 18327000
Alignment:
Q  18 cagggccggccctagggcataggtcgcga 46  Q
    |||||||||||||||||||||||||||||    
T  18326972 cagggccggccctagggcataggtcgcga 18327000  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 45117137 - 45117169
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  45117137 cagggccggccctagggcataggccgcgagtgc 45117169  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 8389761 - 8389728
Alignment:
Q  17 tcagggccggccctagggcataggtcgcgagtgc 50  Q
    |||||||||||||||||||||||| |||||||||    
T  8389761 tcagggccggccctagggcataggccgcgagtgc 8389728  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 4539512 - 4539544
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  4539512 cagggccggccctagggcataggccgcgagtgc 4539544  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 13753759 - 13753791
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  13753759 cagggccggccctagggcataggccgcgagtgc 13753791  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 44733170 - 44733202
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    |||||||||||||||||||||||||| ||||||    
T  44733170 cagggccggccctagggcataggtcgggagtgc 44733202  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 10994582 - 10994549
Alignment:
Q  17 tcagggccggccctagggcataggtcgcgagtgc 50  Q
    |||||||||||||||||||||||| |||||||||    
T  10994582 tcagggccggccctagggcataggccgcgagtgc 10994549  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 19156736 - 19156768
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  19156736 cagggccggccctagggcataggccgcgagtgc 19156768  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 25071278 - 25071310
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  25071278 cagggccggccctagggcataggccgcgagtgc 25071310  T

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Target: scaffold0601 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 6428 - 6460
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  6428 cagggccggccctagggcataggccgcgagtgc 6460  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 12550 - 12518
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  12550 cagggccggccctagggcataggccgcgagtgc 12518  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 1603013 - 1603045
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  1603013 cagggccggccctagggcataggccgcgagtgc 1603045  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 20990100 - 20990132
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  20990100 cagggccggccctagggcataggccgcgagtgc 20990132  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 22012575 - 22012543
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  22012575 cagggccggccctagggcataggccgcgagtgc 22012543  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 2676608 - 2676640
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  2676608 cagggccggccctagggcataggccgcgagtgc 2676640  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 9410013 - 9409981
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  9410013 cagggccggccctagggcataggccgcgagtgc 9409981  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 42879239 - 42879271
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  42879239 cagggccggccctagggcataggccgcgagtgc 42879271  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6262079 - 6262047
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  6262079 cagggccggccctagggcataggccgcgagtgc 6262047  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 10095485 - 10095453
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  10095485 cagggccggccctagggcataggccgcgagtgc 10095453  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 39480714 - 39480682
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  39480714 cagggccggccctagggcataggccgcgagtgc 39480682  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 19685439 - 19685471
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  19685439 cagggccggccctagggcataggccgcgagtgc 19685471  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 33015659 - 33015623
Alignment:
Q  13 atcatcagggccggccctagggcataggtcgcgagtg 49  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  33015659 atcaacagggccggccctagggcataggccgcgagtg 33015623  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 44314502 - 44314470
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  44314502 cagggccggccctagggcataggccgcgagtgc 44314470  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 44322681 - 44322649
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  44322681 cagggccggccctagggcataggccgcgagtgc 44322649  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 5049096 - 5049128
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  5049096 cagggccggccctagggcataggccgcgagtgc 5049128  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21906021 - 21906053
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    ||||||||||||||||||||||| |||||||||    
T  21906021 cagggccggccctagggcataggccgcgagtgc 21906053  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 48596806 - 48596774
Alignment:
Q  18 cagggccggccctagggcataggtcgcgagtgc 50  Q
    |||||||||||||| ||||||||||||||||||    
T  48596806 cagggccggccctaaggcataggtcgcgagtgc 48596774  T

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