View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14403_low_5 (Length: 529)
Name: NF14403_low_5
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 511
Target Start/End: Complemental strand, 45477410 - 45476924
Alignment:
| Q |
20 |
caataatcaatgaagacatgcctgctgttgctcagattgtgttgcgtgtgtaaactgggaagtgcaggtgcaaaattatttttagtgaagattgtgcaag |
119 |
Q |
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| T |
45477410 |
caataatcaatggagacatgcctgttgttgctcagattgtgttgcgtgtgtaaactgggaagtgcaggtgcaaaattatttttagtgaagattgtgcaag |
45477311 |
T |
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| Q |
120 |
tgtaatttcttctaaacaatagtgagcaatggcgcgtagattcaaaatctcaagatgatgatatgatatgatatgctatgccatgaaccctaatgtgctg |
219 |
Q |
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| T |
45477310 |
tgtaatttcttctaaacaatagtgagcaatggcgcgtagattcaaaatctcaagatgatgatatgatatgatatgctatgccatgaaccc---tgtgctg |
45477214 |
T |
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| Q |
220 |
gttctatattttatgaatgaatgaattggtggtgtgtcatatagcgcaacctcattgttatatatatagggagtgatagaggatgtgtttggtgtctgnn |
319 |
Q |
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| T |
45477213 |
gttctatattttatgaatgaatgaattggtggtgtgtcatatagtgcaacctcattgttatatatatagggagtgatagaggatgtgtttggtgtctgtt |
45477114 |
T |
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| Q |
320 |
nnnnnaaatgtgatgtagaatttctttttacaatgataattaaatatataaagaattggaaaaatgtatcattnnnnnnngtggaaatattacacttgag |
419 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45477113 |
tttttaagtgtg--gtagaatttctttttacaatgataattaaatatataaagaattggaaaaatgtatcattaaaaaaaatggaaatattacacttgag |
45477016 |
T |
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| Q |
420 |
tccaaatcttaattaaaaagcacataggtctctctttcacccaatgtttattacctatgtttcacttcattagaagtgtgaataatctcggt |
511 |
Q |
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| T |
45477015 |
tccaaatcttaattaaaaagcacatatgtctctctttcacccaatgtttattacctatgtttcacttcattagaagtgtgaataatctcggt |
45476924 |
T |
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