View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14403_low_7 (Length: 456)
Name: NF14403_low_7
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Original strand, 8862017 - 8862447
Alignment:
| Q |
13 |
cttctctctctgtaccattgaggattttcaccgccgcatgaatctcactcgagagctttcctttaaacacagttccgtgagctccttctcctagcttttc |
112 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8862017 |
cttctccctctgtaccattgaggattttcaccgccacatgaatctcactcgagagctttcctttaaacacagttccgtgagctccttctcctagcttttc |
8862116 |
T |
|
| Q |
113 |
cttgaacccgtttgtaattctttttatatcggcataagaaaatttagtaggtttttgtgctcgatactcctctaaaaacttatcaactctaatttgatcc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8862117 |
cttgaacccgtttgtaattctttttatatcggcataagaaaatctagtaggtttttgtgctcgataatcctctaaaaacttatcaactctaatttgatcc |
8862216 |
T |
|
| Q |
213 |
gcttctttctttctaaaatagagatgtatcttaaataaagcgatgagaaccagccccaaaagaattgaacctagaataaaacattaactgtcaaataaaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8862217 |
tcttctttctttctaaaatagagatgtatcttaaataaagcgatgagaaccagccccaaaagaattgaacctagaataaaacattaactgtcaaataaaa |
8862316 |
T |
|
| Q |
313 |
ttgtcttccagcataaatcaacaaagaaaaacataaaacaagtctaacctgtagaagcgtatataagagattttggaatttgaattgttttccnnnnnnn |
412 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8862317 |
ttgtcttccagcataaatcgtcaaagaaaaacataaaacaagtctaacctgtagaggcgtatataagagattttggaatttgaattgttttccgtttttt |
8862416 |
T |
|
| Q |
413 |
gttacaatcaaaacagtcagtttcacctttg |
443 |
Q |
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||||||||||||||| |||||||| |||||| |
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| T |
8862417 |
gttacaatcaaaacattcagtttcgcctttg |
8862447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 151 - 435
Target Start/End: Original strand, 8866030 - 8866314
Alignment:
| Q |
151 |
aaaatttagtaggtttttgtgctcgatactcctctaaaaacttatcaactctaatttgatccgcttctttctttctaaaatagagatgtatcttaaataa |
250 |
Q |
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||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8866030 |
aaaatctagtaggtttttgagctcgataatcctctaaaaacttatcaactctaatttgatcctcttctttctttctaaaatagagatgtatcttaaataa |
8866129 |
T |
|
| Q |
251 |
agcgatgagaaccagccccaaaagaattgaacctagaataaaacattaactgtcaaataaaattgtcttccagcataaatcaacaaagaaaaacataaaa |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
8866130 |
agcgatgagaaccagccccaaaagaattgaacctagaacaaaacattaactgtcaaataaaattgtcttccagcataaatcattaaagaaaaatataaaa |
8866229 |
T |
|
| Q |
351 |
caagtctaacctgtagaagcgtatataagagattttggaatttgaattgttttccnnnnnnngttacaatcaaaacagtcagttt |
435 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
8866230 |
caagtctaacctgtagaggcgtatataagagattttggaatttgaattgttttcctttttttgttacaatcaaaacattcagttt |
8866314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 8979456 - 8979636
Alignment:
| Q |
52 |
gaatctcactcgagagctttcctttaaacacagttccgtgagctccttctcctagcttttccttgaacccgtttgtaattctttttatatcggcataaga |
151 |
Q |
| |
|
|||||||| | ||||| ||||||||||| || |||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| ||| |||| |
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| T |
8979456 |
gaatctcatttgagagttttcctttaaatacttttccgtgagctccttctcctagtttttccttaaacccatttgtgattctttttatatcagcaaaaga |
8979555 |
T |
|
| Q |
152 |
aaatttagtaggtttttgtgctcgatactcctctaaaaacttatcaactctaatttgatccgcttctttctttctaaaata |
232 |
Q |
| |
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|||| ||||||||| |||||||| ||| |||||||||||||| |||||||||| |||||| ||||||| ||||||||||| |
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| T |
8979556 |
aaatctagtaggttgttgtgctctataatcctctaaaaacttgtcaactctaacttgatcttcttctttttttctaaaata |
8979636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 9125634 - 9125802
Alignment:
| Q |
52 |
gaatctcactcgagagctttcctttaaacacagttccgtgagctccttctcctagcttttccttgaacccgtttgtaattctttttatatcggcataaga |
151 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||| ||||||||||||| ||||||||| ||||| | || |||||||||||||| | ||| || |
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| T |
9125634 |
gaatctcactagagagttttcctttaaacacggttccgtgtgctccttctcctaacttttccttaaacccactagtgattctttttatatcagaatatga |
9125733 |
T |
|
| Q |
152 |
aaatttagtaggtttttgtgctcgatactcctctaaaaacttatcaactctaatttgatccgcttcttt |
220 |
Q |
| |
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|||| | | ||| |||||||||| ||| |||||||||||| |||||||||||| |||||| ||||||| |
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| T |
9125734 |
aaatctggcaggcttttgtgctctataatcctctaaaaacctatcaactctaacttgatcttcttcttt |
9125802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 9086443 - 9086624
Alignment:
| Q |
30 |
ttgaggattttcaccgccgcatgaatctcactcgagagctttcctttaaacacagttccgtgagctccttctcctagcttttccttgaacccgtttgtaa |
129 |
Q |
| |
|
||||| |||||||| ||| | |||| ||||| ||||| ||||| |||||||| |||||||||||||||||||| || || ||||| ||||| ||| | |
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| T |
9086443 |
ttgagaattttcacagccaccagaatatcactagagagttttcccttaaacactgttccgtgagctccttctccaagtttctccttaaacccacctgtga |
9086542 |
T |
|
| Q |
130 |
ttctttttatatcggcataagaaaatttagtaggtttttgtgctcgatactcctctaaaaacttatcaactctaatttgatc |
211 |
Q |
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|| |||||||||| ||||| |||||| ||| ||| |||||||||| | | || |||||||||||||||| ||||| |||||| |
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| T |
9086543 |
ttgtttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattctaacttgatc |
9086624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 9070166 - 9070334
Alignment:
| Q |
52 |
gaatctcactcgagagctttcctttaaacacagttccgtgagctccttctcctagcttttccttgaacccgtttgtaattctttttatatcggcataaga |
151 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || | |||||||||||||||||||||||||||||| || || | || || ||||||||||| | || || |
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| T |
9070166 |
gaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaatccactcgtgatcctttttatatcagagtatga |
9070265 |
T |
|
| Q |
152 |
aaatttagtaggtttttgtgctcgatactcctctaaaaacttatcaactctaatttgatccgcttcttt |
220 |
Q |
| |
|
|||| | | ||| ||||| |||| ||| ||||||||||||||||||| ||||| |||||| ||||||| |
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|
| T |
9070266 |
aaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgatcttcttcttt |
9070334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 9377532 - 9377467
Alignment:
| Q |
90 |
tgagctccttctcctagcttttccttgaacccgtttgtaattctttttatatcggcataagaaaat |
155 |
Q |
| |
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|||||||||||||||| |||||||| || || ||||| |||||||| ||||| ||||||| |||| |
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| T |
9377532 |
tgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcataagtaaat |
9377467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 8926783 - 8926695
Alignment:
| Q |
72 |
cctttaaacacagttccgtgagctccttctcctagcttttccttgaacccgtttgtaattctttttatatcggcataagaaaatttagt |
160 |
Q |
| |
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|||||| | |||| ||| ||||||||||| ||||||||||| |||||| | |||||||| || ||||| |||||||||||| |||| |
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|
| T |
8926783 |
cctttatagacagctccatgagctccttcgcctagcttttctttgaactgatccgtaattctcttgatatctgcataagaaaatctagt |
8926695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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