View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14403_low_8 (Length: 449)
Name: NF14403_low_8
Description: NF14403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14403_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Original strand, 7551516 - 7551943
Alignment:
| Q |
6 |
gtcaacgtgtcagtgacgtgcttggcatgtgtctgtgtcagtgcttcctagattttccaaccgataccatcaagaaccagaaagagtagagaagcagctt |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7551516 |
gtcaacgtgtcagtgacgtgtttggcatgtgtctgtgtaagtgcttcatagattttccaaccgataccatcaagaaccagaaagagtagagaagcagctt |
7551615 |
T |
|
| Q |
106 |
tcagacctagcaagtccagaaccatgaatttctctagtagtcttattaataggactacttggtgtggacctaaccaaactcctcctaagaatttgtctca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7551616 |
tcagacctagcaagtccagaaccatgaatttctctagtagtcttattaataggactacttggtgtggacctaaccaaactcctcctaagaatctgtctca |
7551715 |
T |
|
| Q |
206 |
tagctgaaatcaaatgaactgctggatttggaggaggacctgaagtgttgaattttttgcaaaagttcatatgttttgtcattgcttcttctgtgcttac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7551716 |
tagctgaaatcaaatgaactgctggatttggaggaggacctgaagtattgaattttttgcaaaagttcatatgttttgtcattgcttcttctgtgcttac |
7551815 |
T |
|
| Q |
306 |
aagtctttctgaccttacaatttcatctttaacagcttcaccacataatccacaaacccattttccttgatacctttctctgattctttctatgtatgct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7551816 |
aagtctttctgaccttacaatttcatctttaacagcttcaccacataatccacaaacccattttccttgatacctttctctgattctttctatgtatgct |
7551915 |
T |
|
| Q |
406 |
ggtgtgcactcttctgttagtccacagc |
433 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7551916 |
ggtgtgcactcttctgttagtccacagc |
7551943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University