View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_high_12 (Length: 472)

Name: NF14404_high_12
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_high_12
NF14404_high_12
[»] chr8 (6 HSPs)
chr8 (17-296)||(14390840-14391119)
chr8 (94-184)||(14356789-14356875)
chr8 (55-95)||(14362373-14362413)
chr8 (407-453)||(3497503-3497549)
chr8 (196-296)||(3497274-3497368)
chr8 (354-405)||(14391177-14391224)
[»] chr3 (1 HSPs)
chr3 (58-95)||(41654367-41654404)
[»] chr7 (2 HSPs)
chr7 (56-95)||(24237002-24237041)
chr7 (58-95)||(37180416-37180453)
[»] chr4 (1 HSPs)
chr4 (57-95)||(49600530-49600568)
[»] chr2 (2 HSPs)
chr2 (57-95)||(17316188-17316226)
chr2 (59-95)||(7154588-7154624)
[»] chr5 (1 HSPs)
chr5 (58-95)||(1374887-1374924)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 14390840 - 14391119
Alignment:
Q  17 atattcataacactaccnnnnnnntcatacaaaacacccaccaacataatatcaaaagtcttaatcaaaattcaacatacaatcgtatatccaaacataa 116  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14390840 atattcataacactaccaaaaaaatcatacaaaacacccaccaacataatatcaaaagtcttaatcaaaattcaacatacaatcgtatatccaaacataa 14390939  T
Q  117 cctaaatcaaccaaatatagaaactaacagatctaattaatcaaatcaatcaaaaccgattaatacgccttgttcagatacctcgtccaagcgtgaaact 216  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14390940 cctaaatcaatcaaatatagaaactaacagatctaattaatcaaatcaatcaaaaccgattaatacgccttgttcagatacctcgtccaagcgtgaaact 14391039  T
Q  217 gaaggtacttgttcctctgtcgctgctagagtcaaacttcttaccatcaagcaacaacgttccagtaaaatgaactacac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391040 gaaggtacttgttcctctgtcgctgctagagtcaaacttcttaccatcaagcaacaacgttccagtaaaatgaactacac 14391119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 14356875 - 14356789
Alignment:
Q  94 tacaatcgtatatccaaacataacctaaatcaaccaaatatagaaactaacagatctaattaatcaaatcaatcaaaaccgattaatacgc 184  Q
    |||||||||||| ||||||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14356875 tacaatcgtatacccaaacataacctaaatcaa----atatagaaactaacggatctaattaatcaaatcaatcaaaaccgattaatacgc 14356789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 14362413 - 14362373
Alignment:
Q  55 caccaacataatatcaaaagtcttaatcaaaattcaacata 95  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14362413 caccaacataatatcaaaagtcttaatcaaaattcaacata 14362373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 3497503 - 3497549
Alignment:
Q  407 gtatccgaaccttcaccttctctgagaagcttcttcatcaaaccttg 453  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||||    
T  3497503 gtatcccaaccttcaccttctttgagaagcttcttcttcaaaccttg 3497549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 3497274 - 3497368
Alignment:
Q  196 acctcgtccaagcgtgaaactgaaggtacttgttcctctgtcgctgctagagtcaaacttcttaccatcaagcaacaacgttccagtaaaatgaactaca 295  Q
    |||| |||||||||||||| |||| |||   ||||| || || |||||||| ||||||||| ||||||||||   ||||||||| ||| |||||||||||    
T  3497274 accttgtccaagcgtgaaattgaaagta---gttcccctatctctgctagaatcaaacttcgtaccatcaag---caacgttccggtataatgaactaca 3497367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 14391177 - 14391224
Alignment:
Q  354 caacgaacaacgaacatagatagataccgtgaacttcgtcgtcaaggatggg 405  Q
    |||||||||||||||||||    |||||||||||||||||||||||| ||||    
T  14391177 caacgaacaacgaacatag----ataccgtgaacttcgtcgtcaaggttggg 14391224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 41654404 - 41654367
Alignment:
Q  58 caacataatatcaaaagtcttaatcaaaattcaacata 95  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41654404 caacataatatcaaaagtcttaatcaaaattcaacata 41654367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 24237002 - 24237041
Alignment:
Q  56 accaacataatatcaaaagtcttaatcaaaattcaacata 95  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  24237002 accaacatagtatcaaaagtcttaatcaaaattcaacata 24237041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 37180453 - 37180416
Alignment:
Q  58 caacataatatcaaaagtcttaatcaaaattcaacata 95  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  37180453 caacatagtatcgaaagtcttaatcaaaattcaacata 37180416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 49600568 - 49600530
Alignment:
Q  57 ccaacataatatcaaaagtcttaatcaaaattcaacata 95  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  49600568 ccaacatagtatcaaaagtcttaatcaaaattcaacata 49600530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 17316188 - 17316226
Alignment:
Q  57 ccaacataatatcaaaagtcttaatcaaaattcaacata 95  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  17316188 ccaacataacatcaaaagtcttaatcaaaattcaacata 17316226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 7154588 - 7154624
Alignment:
Q  59 aacataatatcaaaagtcttaatcaaaattcaacata 95  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  7154588 aacataatatcaaaagacttgatcaaaattcaacata 7154624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 1374924 - 1374887
Alignment:
Q  58 caacataatatcaaaagtcttaatcaaaattcaacata 95  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  1374924 caacatagtatcgaaagtcttaatcaaaattcaacata 1374887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University