View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14404_high_20 (Length: 410)
Name: NF14404_high_20
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 189316 - 188986
Alignment:
| Q |
1 |
attgtcaaatgcagtttatcacaataatttttctagaaactgctggatgtaaaacatttttcaccatcatagtaaactaggtgcacatagtatgtatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
189316 |
attgtcaaatgcagtttatcacaataatttttctagaaactgctggatgtaaaacatttttcaccatcatagtaaactag-tgcacatagtatgtatgca |
189218 |
T |
|
| Q |
101 |
gtagagcagtatacctactctaattttctttctatgctatgtggttttgatttttccaaa-caaaacaatggaagaaagaatattgaaattgaattgtat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
189217 |
gtagagcagtatacctactctaattttctttatatgctatgtggttttgttttttcccaagcaaaacaatggaagaaagaatattgaaattgaattgtat |
189118 |
T |
|
| Q |
200 |
ttgaaggaagaacctaataatgatatattaaattaattagggattttttcttgaagaggcaattagttagggtttagtagttagttttttacaagtttgt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
189117 |
ttgaaggaagaacctaataatgatatattaaattagttagggattttttcttgaagaggcaattagttagggtttagtagttagtgttttacaagtttgt |
189018 |
T |
|
| Q |
300 |
tgaccaatataaaggtttgatgtaatcgattt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
189017 |
tgaccaatataaaggtttgatgtaatcgattt |
188986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 188988 - 188949
Alignment:
| Q |
371 |
tttgtaacatggtatgatggtatcaaagtcaagacatctt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
188988 |
tttgtaacatggtatgatggtatcaaagtcaagacatctt |
188949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University