View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_22 (Length: 406)
Name: NF14404_high_22
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 34338876 - 34339254
Alignment:
| Q |
19 |
gtttctttacttaattaggacttggagtcttatattagtatatataagggacgggatagtacttggtctttttcacatcatcaaataatcatcaatcata |
118 |
Q |
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| T |
34338876 |
gtttctttacttaattaggacttggagtcttaaattagtatatataagggttgggatagtacttagtctttttcacatcatcaaataatcattaatcata |
34338975 |
T |
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| Q |
119 |
cctgtaaaagcgtccgtccaacatacaccgcaaattgttgtcttggatttgagaccaagggattaattattttctctagtgatttatgcagattgataac |
218 |
Q |
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| T |
34338976 |
cctgtaaaagcttccgtccaacatacaccacaaattgttgtcttggatttgagaccaagggattaattattttctctagtgatttatgcagattgataac |
34339075 |
T |
|
| Q |
219 |
accaagaaaagttaatgtggacacctgaataaatactagatgcaattagattttgatgctaacaatgccataaacataaacaaagtagcccatatcacta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34339076 |
accaagaaaagttaatgtggacacctgaataaatactagatg-aattagattttgatgctaacaatgccataaacataaacaaagtagcccatatcacta |
34339174 |
T |
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| Q |
319 |
gaatgtttaccacacttagagtagacttgatcttcaaacttgggtcagattgtgtggcaacatctggactaagtaagttc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34339175 |
gaatgtttaccacacttagagtagacttgatcttcaaacttgggtcagattgtgtggcaacatctggactaagtaagttc |
34339254 |
T |
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