View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_24 (Length: 386)
Name: NF14404_high_24
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 2808843 - 2808485
Alignment:
| Q |
13 |
aatattcctacataccaaattgacataatcaaacaactgataacaaagttaaattaatgaaataatattatacctgattagcaaaaccccaaaacagcac |
112 |
Q |
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| T |
2808843 |
aatattcctacataccaaattgacataatcaaacaactgataacaaagttaaattaatgaaataatattatacctgattagcaaaaccccaaaacagcac |
2808744 |
T |
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| Q |
113 |
agaaacaaccacactcccccacaattcagccataacatagaacaaacagaaactccaaatccttataattgcaagaggaccaagaaacctaggaccaagg |
212 |
Q |
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| T |
2808743 |
agaaacaaccacactcccccacaattcagccataacatagaacaaacagaaactccaaatccttataattgcaagaggaccaagaaacctaggaccaagg |
2808644 |
T |
|
| Q |
213 |
acattaagaagcttgtctgcaaaagcttcaggatggatatagttgctaagagggtacaaaacaaacccaaaagccccaaagaaagcaataaaaggtaaaa |
312 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2808643 |
acattaagaagcttgtctgcaaatgcttcaggatggatatagttgctaagagggtacaaaacaaacccaaaagccccaaagaaagcaataaaaggtaaaa |
2808544 |
T |
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| Q |
313 |
tgacagagtaaaacagtgcttgttttgacaaaacattagacagttttgtatacaacaac |
371 |
Q |
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| T |
2808543 |
tgacagagtaaaacagtgcttgttttgacaaaacattagacagttttgtatacaacaac |
2808485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 83 - 371
Target Start/End: Original strand, 44271704 - 44271992
Alignment:
| Q |
83 |
tacctgattagcaaaaccccaaaacagcacagaaacaaccacactcccccacaattcagccataacatagaacaaacagaaactccaaatccttataatt |
182 |
Q |
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||||||||| |||| ||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
44271704 |
tacctgattggcaagcccccaaaacaggacagaaatcacaacactcccccacaattcagccatgacatagaacaaacagaaactccaaatcctcataata |
44271803 |
T |
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| Q |
183 |
gcaagaggaccaagaaacctaggaccaaggacattaagaagcttgtctgcaaaagcttcaggatggatatagttgctaagagggtacaaaacaaacccaa |
282 |
Q |
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||||| ||||||||||||| ||| ||||||| ||||||||| || || ||||| || | ||| || ||||||||||||||||| |||||||||||||||| |
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| T |
44271804 |
gcaagcggaccaagaaaccgaggtccaaggatattaagaaggttatcagcaaatgcctgagggtgaatatagttgctaagaggatacaaaacaaacccaa |
44271903 |
T |
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| Q |
283 |
aagccccaaagaaagcaataaaaggtaaaatgacagagtaaaacagtgcttgttttgacaaaacattagacagttttgtatacaacaac |
371 |
Q |
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| T |
44271904 |
aagccccaaagaaagcaataaaaggaacaataacagaataaaaaagagcctgttttgacaaaacattagataactttgtgtacaacaac |
44271992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 367
Target Start/End: Original strand, 8739671 - 8739762
Alignment:
| Q |
276 |
aacccaaaagccccaaagaaagcaataaaaggtaaaatgacagagtaaaacagtgcttgttttgacaaaacattagacagttttgtatacaa |
367 |
Q |
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||||||||| ||| ||||||||||||||| |||||| | || ||||| | || |||||||||||||||||||| ||| |||| |||||| |
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| T |
8739671 |
aacccaaaatcccaaaagaaagcaataaatcataaaattatagtgtaaacctgttcttgttttgacaaaacattaaacaactttgcatacaa |
8739762 |
T |
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