View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_high_26 (Length: 366)

Name: NF14404_high_26
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_high_26
NF14404_high_26
[»] chr1 (16 HSPs)
chr1 (1-347)||(11890519-11890865)
chr1 (1-347)||(11881153-11881499)
chr1 (12-347)||(11903653-11903988)
chr1 (9-347)||(52819808-52820146)
chr1 (1-45)||(11890953-11890997)
chr1 (3-45)||(11881719-11881761)
chr1 (3-45)||(11891085-11891127)
chr1 (3-45)||(11881587-11881629)
chr1 (3-45)||(11881851-11881893)
chr1 (3-45)||(11904048-11904090)
chr1 (3-45)||(11904180-11904222)
chr1 (3-45)||(11904312-11904354)
chr1 (3-45)||(11904444-11904486)
chr1 (3-45)||(11904576-11904618)
chr1 (3-45)||(11904708-11904750)
chr1 (2-39)||(11882673-11882710)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 11890865 - 11890519
Alignment:
Q  1 ctggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatgg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11890865 ctggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttggacttctcacattctttgaaatgtttctttgaagcataagcaaatgg 11890766  T
Q  101 cttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggt 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11890765 cttagccttgagcacaacctcgtacttgtctttggatttcaagtacaagtttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggt 11890666  T
Q  201 ggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgt 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11890665 ggagcataaagggcagccttgcacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgt 11890566  T
Q  301 aagccttgatgattttgctcccggctttgcatgtcacttcaacaaca 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11890565 aagccttgatgattttgctcccggctttgcatgtcacttcaacaaca 11890519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 11881499 - 11881153
Alignment:
Q  1 ctggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatgg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11881499 ctggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatgg 11881400  T
Q  101 cttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggt 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11881399 cttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggt 11881300  T
Q  201 ggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgt 300  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |    
T  11881299 ggagcatatagggcagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccat 11881200  T
Q  301 aagccttgatgattttgctcccggctttgcatgtcacttcaacaaca 347  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||    
T  11881199 aagccttgacaattttgctcccggctttgcatgtcacctcaacaaca 11881153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 11903988 - 11903653
Alignment:
Q  12 ggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctttga 111  Q
    |||||||||| |  || |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11903988 ggtggaggtggtgagttgtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttga 11903889  T
Q  112 gcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag 211  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11903888 gcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag 11903789  T
Q  212 ggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttgatg 311  Q
    || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||      
T  11903788 ggtagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgaca 11903689  T
Q  312 attttgctcccggctttgcatgtcacttcaacaaca 347  Q
    |||||||||||||||||||||||||| |||||||||    
T  11903688 attttgctcccggctttgcatgtcacctcaacaaca 11903653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 52819808 - 52820146
Alignment:
Q  9 ggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctt 108  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||| || || ||||||||||   |||| ||||| |||||||| || ||||||||||| |    
T  52819808 ggaggaggaggtgacttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagcct 52819907  T
Q  109 tgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcata 208  Q
    ||||||| || || ||||||||||| ||||| |    ||| |  ||||| |  || ||||| ||||||||||||||||| ||  | ||||||||||||||    
T  52819908 tgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcata 52820007  T
Q  209 aagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttg 308  Q
     ||    || || |||||    ||||||||||| ||||||| |||||    || |||||||||||||||||||||  |||||||||||||||||||||||    
T  52820008 tagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggcatactttccattactcttagttttaccgtaagccttg 52820107  T
Q  309 atgattttgctcccggctttgcatgtcacttcaacaaca 347  Q
    ||||| || || || ||||||||| | || |||||||||    
T  52820108 atgatgttccttccagctttgcatttgacctcaacaaca 52820146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11890997 - 11890953
Alignment:
Q  1 ctggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11890997 ctggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11890953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11881761 - 11881719
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11881761 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11881719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11891127 - 11891085
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11891127 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11891085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11881629 - 11881587
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  11881629 ggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11881893 - 11881851
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  11881893 ggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904090 - 11904048
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  11904090 ggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11904048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904222 - 11904180
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  11904222 ggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904354 - 11904312
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  11904354 ggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904486 - 11904444
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  11904486 ggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904618 - 11904576
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  11904618 ggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904750 - 11904708
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  11904750 ggtgcaggaggtggaggtgatttgtagtagtatggagttggtg 11904708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 11882710 - 11882673
Alignment:
Q  2 tggtgcgggaggtggaggtgatttgtagtagtaaggag 39  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  11882710 tggtgagggaggtggaggtgatttgtaatagtaaggag 11882673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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