View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_27 (Length: 362)
Name: NF14404_high_27
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 42638503 - 42638166
Alignment:
| Q |
4 |
aatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacactttttcgta |
103 |
Q |
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| T |
42638503 |
aatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacactttttcgta |
42638404 |
T |
|
| Q |
104 |
tcattaaaagttatgatatggcagagtacttgaaactggaattcaagaaggtaaatgaatacctggttgctaaatttgtattagttttctgacgaaagta |
203 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||| || ||||||||||| |
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| T |
42638403 |
tcataaaaagttatgatatggcagagtacttgaaactggaattcatgaaggtaaatgaatatctggttgccaaatttgcattagtgttttgacgaaagta |
42638304 |
T |
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| Q |
204 |
tgggattgacacaagactttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatcttcagatgtgtggtctgt |
303 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42638303 |
tgggact--cacaagactttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatcttcagatgtgcggtctgt |
42638206 |
T |
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| Q |
304 |
tggctaagtttgctcttgttcgcgaaactgctaaagctgc |
343 |
Q |
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||||||||||||||||||||||||| |||||||| ||||| |
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| T |
42638205 |
tggctaagtttgctcttgttcgcgacactgctaacgctgc |
42638166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 42566446 - 42566552
Alignment:
| Q |
1 |
cgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacactttttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42566446 |
cgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacaatttttc |
42566545 |
T |
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| Q |
101 |
gtatcat |
107 |
Q |
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|||||| |
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| T |
42566546 |
atatcat |
42566552 |
T |
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