View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_31 (Length: 327)
Name: NF14404_high_31
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 800170 - 800468
Alignment:
| Q |
15 |
aatatacatatgaatgagttaacttacgaaccctttcaaaaataaataaaactgaactaaagatatgaccaacttgcatatggattgaatggagctttca |
114 |
Q |
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| T |
800170 |
aatatacatatgagtgagttaacttacgaaccctttcaaaagtaaataaaactgaactaaagatatgaccaacttgcatatgaattgaatggagctttca |
800269 |
T |
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| Q |
115 |
aacccaccggttcaccttctcatctgcaaaatgacgttagataaataatccacaaactccctcaacacaacatacaaacaaaataaatacttttgagggt |
214 |
Q |
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| T |
800270 |
aacccaccagtccaccttctcatatgcaaaatgacgttagataaattatccacaaactccctcaacacaacatacaaacaaaataaatacttttgagggt |
800369 |
T |
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| Q |
215 |
attaattgacactatatgtttaaaatagtacactcaaatttaagcatcacaactttataaacaaaagttgaacacgtgagataacattgcatacaacac |
313 |
Q |
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| T |
800370 |
attaattaacactatatgtttaaaatagtacactcaaatttaagcatcacaactttataaacaaaagttgaacacgtgagataacattgcatacaacac |
800468 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 35120318 - 35120241
Alignment:
| Q |
102 |
aatggagctttcaaacccaccggttcaccttctcatc-tgcaaaatgacgttagataaataatccacaaactccctca |
178 |
Q |
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|||| ||||| ||||||||| || |||| ||||||| ||||||| |||||||||||||||||||| ||||||||| |
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| T |
35120318 |
aatgaagcttccaaacccactcgtccaccatctcatcctgcaaaacatcgttagataaataatccacatactccctca |
35120241 |
T |
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