View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_58 (Length: 250)
Name: NF14404_high_58
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_58 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 36782960 - 36783202
Alignment:
| Q |
8 |
aaaatgaataaattaaatatatggttgagcgtatagggagagaaagttatttcagaaaatctatattctagaccactagaaattaagaacgaaattctta |
107 |
Q |
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| T |
36782960 |
aaaatgaataaattaaatatatggttgagcgtatagggagagaaagttctttcacaaaatctatattctagaccactagaaattaagaacgaaattctta |
36783059 |
T |
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| Q |
108 |
tgtttcttcttttaacatttataggtaatattcttagaataagctctacattgtcaaggatcccccattccgacacaaaatttaactcaaacaatgcacc |
207 |
Q |
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| T |
36783060 |
tgtttcttcttttaacatttataggtaatattcttagaataagctctacattgtcaaggatcccccattccgacacaaaatttaactcaaacaatgcacc |
36783159 |
T |
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| Q |
208 |
ctcacgtaatcttccactatattttgtcgttttgggcggtgaa |
250 |
Q |
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| T |
36783160 |
ctcacgtaatcttccactatattttgtcgttttgggcggtgaa |
36783202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 36752941 - 36753100
Alignment:
| Q |
91 |
taagaacgaaattcttat--gtttcttcttttaacatttataggtaatattcttagaataagctctacattgtcaaggatcccccattccgacacaaaat |
188 |
Q |
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| T |
36752941 |
taagaacaaaattcttatttgtttcttcatt-aacatttttaggtcatattcctagaataagctttacattgtcaaggatcccc-attcggacaaaaaat |
36753038 |
T |
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| Q |
189 |
ttaactcaaacaatgcaccctcacgtaatcttccactatattttgtcgttttgggcggtgaa |
250 |
Q |
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| T |
36753039 |
ttaactcaaataatgcaccctcacgtaatcttccactatattttgtcgttttgggcggtgaa |
36753100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 36791218 - 36791363
Alignment:
| Q |
91 |
taagaacgaaattcttatgtttcttcttttaacatttataggtaatattcttagaataagctctac-attgtcaaggatcccccattccgacacaaaatt |
189 |
Q |
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| T |
36791218 |
taagaacaaaattcttatgtttcttcttttaacatttatagataatattcttagaataagctatactattttcaaggat-tcccatttcgacacataatt |
36791316 |
T |
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| Q |
190 |
taactcaaacaatgcaccctcacgtaatcttccactatattttgtcg |
236 |
Q |
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| T |
36791317 |
ttactcaaacaatgcaccctcatgtaatcttccactatattttgtcg |
36791363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 36770565 - 36770793
Alignment:
| Q |
9 |
aaatgaataaattaaatatatggttgagcgtatagggagagaaagttatttcagaaaatctatattctagaccactagaaat----------taagaacg |
98 |
Q |
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| T |
36770565 |
aaatgaataaattaaatatatggttgagggcatgctgagagaaagttctttcacaacatctaaattataaaccactagaaatgggaaactcctaagaaaa |
36770664 |
T |
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| Q |
99 |
a---aattcttatgtttcttcttttaacatttatagg---taatattcttagaataagctctacattgtcaaggatcccccattccgacacaaaatttaa |
192 |
Q |
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| T |
36770665 |
ataaaattcttatgtttcttcttttaac-tttataggtaataatatttttagaattatctctacattgtcaaggat-tcccattccgacacaaaa-ttca |
36770761 |
T |
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| Q |
193 |
ctcaaacaatgcaccctcacgtaatcttccac |
224 |
Q |
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| T |
36770762 |
cttaaacattgcaccctcacgtcattttccac |
36770793 |
T |
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