View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_59 (Length: 249)
Name: NF14404_high_59
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_59 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 6275471 - 6275231
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275471 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattac |
6275372 |
T |
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| Q |
109 |
attacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275371 |
attacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagc |
6275272 |
T |
|
| Q |
209 |
cctataccatttttcaaggaactcttccgaactgatggtga |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275271 |
cctataccatttttcaaggaactcttccgaactgatggtga |
6275231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 6322338 - 6322098
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattac |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
6322338 |
gagatgaagcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagcttctcaaagtttcatacctcaattacaatctgcaattac |
6322239 |
T |
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| Q |
109 |
attacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagc |
208 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6322238 |
attacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtatacttagcaaacttagc |
6322139 |
T |
|
| Q |
209 |
cctataccatttttcaaggaactcttccgaactgatggtga |
249 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |
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| T |
6322138 |
cccataccatttttcaaggaactcttccgaactgatggtga |
6322098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 6332922 - 6332682
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattac |
108 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||| |
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| T |
6332922 |
gagatgaatcatttggccacttgaagtcttcagactttcttgtttatatactgaaatcagcatctcaaaatgttatacctcaattacgatctgcacttac |
6332823 |
T |
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| Q |
109 |
attacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagc |
208 |
Q |
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||||||||||||| ||||||| ||||||| ||||| ||||| || ||||| ||| ||||||| ||| |||||||||||| | ||||||||||| ||||| |
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| T |
6332822 |
attacaattcaatcagccagagtttaacacttttgaagatgtccgttcattatatcatggtggaattgaattacctactaatgcacttagcaaaattagc |
6332723 |
T |
|
| Q |
209 |
cctataccatttttcaaggaactcttccgaactgatggtga |
249 |
Q |
| |
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|| |||||| | ||| |||||||| || ||||||||||||| |
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| T |
6332722 |
cccataccagtgttccaggaactcctcagaactgatggtga |
6332682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 6364110 - 6363870
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattac |
108 |
Q |
| |
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|||||||||||||||| ||| ||||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||| |||| |||| | |||| |
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| T |
6364110 |
gagatgaatcatttggacacacaaagtcatcagactttcttgttcacatactcaaatctgcatctcaaaatgtcatacctcgattaagatctatagttac |
6364011 |
T |
|
| Q |
109 |
attacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagc |
208 |
Q |
| |
|
|||||||||| || |||| || ||||||| |||||| |||||||| || | ||||| ||||| || | | |||||| || ||| || |||||||| |
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| T |
6364010 |
attacaattccatgagcctgagtttaacacctttgaagatgtgcgctcgctctatgaaggtggaatcaggcttcctactgatatactaagtgaacttagc |
6363911 |
T |
|
| Q |
209 |
cctataccatttttcaaggaactcttccgaactgatggtga |
249 |
Q |
| |
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|| |||||||| ||||||||||| ||||||||||||||||| |
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| T |
6363910 |
ccaataccattgttcaaggaacttttccgaactgatggtga |
6363870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 6353314 - 6353074
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattac |
108 |
Q |
| |
|
|||||||||| ||||| ||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| | |||| |
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| T |
6353314 |
gagatgaatcttttggacacacaaagtcatcagactttcttgtttacatactcaaatcagcatctcaaaatgtcatacctcaactgagatctgtagttac |
6353215 |
T |
|
| Q |
109 |
attacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagc |
208 |
Q |
| |
|
||||||| ||||||| || || ||||||| |||| | |||||||| || | || || ||||| ||||| | |||||| | ||| ||| | |||| |
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| T |
6353214 |
attacaactcaataaccctgagtttaacacctttcaagatgtgcgctctctctacgagggtggaattaagcttcctactgatgtactaagccagattagt |
6353115 |
T |
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| Q |
209 |
cctataccatttttcaaggaactcttccgaactgatggtga |
249 |
Q |
| |
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|| |||||||| ||||||||||| |||||| |||||||||| |
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| T |
6353114 |
ccaataccattgttcaaggaacttttccgatctgatggtga |
6353074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 7460212 - 7459972
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||| ||| |||||||||||| | |||| | ||||||||| | || |||| | ||| |
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| T |
7460212 |
gagatgaatcatttggtcacttgaagtcatctgactttcttggttatgtactcaaatcagcaactcacagagtcatacctaatttgagatctaaagctac |
7460113 |
T |
|
| Q |
109 |
attacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagc |
208 |
Q |
| |
|
||||||| ||||||| || || ||||||| |||||| ||| | || || | || |||||||| ||||| | |||||| | ||| ||| | ||||| |
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|
| T |
7460112 |
attacaactcaataaccctgagtttaacacctttgaagatatacgctctctctacgatggtggaattaagcttcctactgatgtactaagccagattagc |
7460013 |
T |
|
| Q |
209 |
cctataccatttttcaaggaactcttccgaactgatggtga |
249 |
Q |
| |
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|| |||||||| ||||| ||||| || |||||||||||||| |
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| T |
7460012 |
ccaataccattgttcaaagaactttttcgaactgatggtga |
7459972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 7471788 - 7471550
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||| ||| |||||||||||| | |||| | ||||| ||| | || |||| | |||| |
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| T |
7471788 |
gagatgaatcatttggtcacttgaagtcatctgactttcttggttatgtactcaaatcagcaactcaga--gtcatgcctaatttgagatctaaagttac |
7471691 |
T |
|
| Q |
109 |
attacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagc |
208 |
Q |
| |
|
||||||| ||||||| || || ||||||| |||||| ||| ||||| | || |||||||| ||||| | |||||| | ||| ||||| ||||| |
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|
| T |
7471690 |
attacaactcaataaccccgagtttaacacctttgaagatacacgatctctctacgatggtggaattaagcttcctactgatgtactaagcaagattagc |
7471591 |
T |
|
| Q |
209 |
cctataccatttttcaaggaactcttccgaactgatggtga |
249 |
Q |
| |
|
|| |||||||| ||||| |||| || |||||||||||||| |
|
|
| T |
7471590 |
ccaataccattgttcaaagaacattttcgaactgatggtga |
7471550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 6424965 - 6424909
Alignment:
| Q |
32 |
aagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacct |
88 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||| |||||||||| |||||||| |
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|
| T |
6424965 |
aagtcttcagactttcttgctttcatactcaaatcagcatctcaaaatatcatacct |
6424909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 6289894 - 6289818
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcata |
85 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| ||||||| | || |||| ||||||| ||||||| || ||||| |
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|
| T |
6289894 |
gagatgaatcatttgatcacaagaagtcttcagaatttcttgataacctactgaaatcagcatctcaagatttcata |
6289818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 42694114 - 42694042
Alignment:
| Q |
9 |
gagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgt |
81 |
Q |
| |
|
|||||||| | |||||||||||||| || |||||||||||| ||| ||| ||| |||||||||||||||| |
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|
| T |
42694114 |
gagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaaagcagtatctcaaaatgt |
42694042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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