View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_61 (Length: 248)
Name: NF14404_high_61
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_61 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 45395710 - 45395480
Alignment:
| Q |
3 |
ctcaatccgtatccatacaaaaatcacatcaccacaaaaatctcaaaacactgatttaaaaaacttgatgttcttctccaaaatacaacactaattggct |
102 |
Q |
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| T |
45395710 |
ctcaatccgtatccatacaaaaatcacatcaccacaaaaatctcaaaacactgatttaaaaaacttgatgttcttctccaaaatacaacactaattggct |
45395611 |
T |
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| Q |
103 |
taaaaactcaagcaaaacccattatttgcttcaaatttttgaccatcgtgaaacnnnnnnnnnnnnncatacttgtttacctttaatgtagcttcaacac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
45395610 |
taaaaactcaagcaaaacccattatttgcttcaaattttttaccatcgtgcaac-agatttttttttcatacttgtttacctttaatgtagcttcaacac |
45395512 |
T |
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| Q |
203 |
cattaatgggttccttcaaatgggtcatcatg |
234 |
Q |
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|||||||||||||||| ||||||||| ||||| |
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| T |
45395511 |
cattaatgggttccttaaaatgggtcttcatg |
45395480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 9170441 - 9170211
Alignment:
| Q |
3 |
ctcaatccgtatccatacaaaaatcacatcaccacaaaaatctcaaaacactgatttaaaaaacttgatgttcttctccaaaatacaacactaattggct |
102 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||| |
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| T |
9170441 |
ctcaatccgtatccatacaaaaatcacatcaccacagaaatctcaaaacacttatttgaaaaacttgatgttcttctccaaaatacaacacaaactggct |
9170342 |
T |
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| Q |
103 |
taaaaactcaagcaaaacccattatttgcttcaaatttttgaccatcgtgaaacnnnnnnnnnnnnncatacttgtttacctttaatgtagcttcaacac |
202 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| | |
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| T |
9170341 |
taaaaactcaagcaaaacccattatttgcttcgaatttttgaccctcgtgaaac-agatttttttttcatgcttgtttacctttaatgtagcttcaacgc |
9170243 |
T |
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| Q |
203 |
cattaatgggttccttcaaatgggtcatcatg |
234 |
Q |
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|||||||||||||||| ||||||||| ||||| |
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| T |
9170242 |
cattaatgggttccttaaaatgggtcttcatg |
9170211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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