View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_64 (Length: 244)
Name: NF14404_high_64
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_64 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 28668766 - 28668523
Alignment:
| Q |
3 |
tccagtaatataatatgttgggtaacaatgttaattctctcttttaaagtgannnnnnnnn-atatgaacttttgaccaataaattcaaagttgaaacaa |
101 |
Q |
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| T |
28668766 |
tccaataatataatatgttggatagcaatgttaattctctcttttaaagtgacttttttttcatatgaacttttgaccaataaattcaaagttgaaacaa |
28668667 |
T |
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| Q |
102 |
atatgacagaacatgaaatgttatttttatgataatgtcctaaaagtaaatacagggtcagatctacatttgttaaataggggataattt-aacccagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
28668666 |
atatgacagaacatgaaatgttatttttatgataatgttctaaaagtaaatacagggtcagatctacatttgttaaataggggataatttaaacctagta |
28668567 |
T |
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| Q |
201 |
acaatcatgattcgattctaaaacataggaggtgaagattacat |
244 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
28668566 |
acaattatgattcgattctaaaacgtaggaggtgaagattacat |
28668523 |
T |
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