View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_high_70 (Length: 235)
Name: NF14404_high_70
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_70 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 5211783 - 5211551
Alignment:
| Q |
3 |
tgttgttttctataaataaaaacacactatttataacacatacattatttt-aaggtgatcataacatatacacttttattggttaaaatttaaatatat |
101 |
Q |
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| T |
5211783 |
tgttgtttcctataaataaaaacacactatttataacacatacactatttttaaggtgatcataacatatacacttttatcggttaaaattaaaatatat |
5211684 |
T |
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| Q |
102 |
tatgttaaatttataagaaaccttcataatttagtaaaatccatttaatttcaaccgacagaaacgtgtgttgnnnnnnnngatgttttacatagtgttg |
201 |
Q |
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| T |
5211683 |
tatgttaaatttataagaaaccttcataatttagtaaaatccatttaatttcaaccgacagaaacgtgtgttgaaaaaaaa-ttgttttacatagtgttg |
5211585 |
T |
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| Q |
202 |
cttgctacacactcttctcatcatacatgctcat |
235 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
5211584 |
cttgctacacactcttctcatcatacatactcat |
5211551 |
T |
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