View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14404_high_72 (Length: 233)
Name: NF14404_high_72
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_high_72 |
 |  |
|
| [»] scaffold0071 (1 HSPs) |
 |  |  |
|
| [»] scaffold0596 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 4737774 - 4737854
Alignment:
| Q |
12 |
aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4737774 |
aacagtttggagccaaaaccattagaattagggttggcacaatttgttagcaatgttattcatattagaaataagtatgat |
4737854 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 32077466 - 32077549
Alignment:
| Q |
9 |
cagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32077466 |
cagaacagtttggagccaaaaccatcaagattagggttggcataaattgttagcaatgttattcatattagaaataagtatgat |
32077549 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 5578150 - 5578217
Alignment:
| Q |
22 |
agccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtat |
89 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
5578150 |
agccaaaaccatcagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtat |
5578217 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 51646967 - 51646882
Alignment:
| Q |
7 |
gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
||||||| ||||||||||||||| ||| | |||||||||| ||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51646967 |
gtcagaatagtttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagtatgat |
51646882 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 46835521 - 46835611
Alignment:
| Q |
3 |
aacagtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata |
93 |
Q |
| |
|
||||| || ||||||||| |||||||||||| | |||||||||| |||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
46835521 |
aacagccacaacagtttgaagccaaaaccatcaagattagggttgacacaatttgttaatattgttattcatattagaaataagtatgata |
46835611 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 45640678 - 45640765
Alignment:
| Q |
7 |
gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa |
94 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |||||||| ||| || ||||||| |||||||| |||| || ||||| |
|
|
| T |
45640678 |
gtcagaactatttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataaataagataa |
45640765 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 15451692 - 15451633
Alignment:
| Q |
33 |
ttagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| ||||||||||||||| |||| |
|
|
| T |
15451692 |
ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat |
15451633 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 14836470 - 14836396
Alignment:
| Q |
18 |
ttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14836470 |
ttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtatgat |
14836396 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 30850193 - 30850269
Alignment:
| Q |
17 |
tttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata |
93 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30850193 |
tttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgata |
30850269 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 27229318 - 27229234
Alignment:
| Q |
9 |
cagaacagtttggagccaaaaccatta-gaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||| | ||| |||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
27229318 |
cagaacaatttggagccaaaatcattaagaattagggttgacgcaaattattaacaatgctattcatattagaaataagtatgat |
27229234 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 38883295 - 38883397
Alignment:
| Q |
91 |
ataattaagagctattggattaatcaagcacacaaattctattgg-cactctatgcattagatcttttt--gtctcttttctcccatcttcctctcacct |
187 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||| ||||||| | ||||| || || ||||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
38883295 |
ataattaagagctattagatcaatcaagatcacatattctatcgtacactccatacaatagatatttttctgtctcttctctcccatcttcctctcacct |
38883394 |
T |
 |
| Q |
188 |
ttt |
190 |
Q |
| |
|
||| |
|
|
| T |
38883395 |
ttt |
38883397 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 47965525 - 47965599
Alignment:
| Q |
8 |
tcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaa |
82 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
47965525 |
tcagaacagtttggagccaaaaccatcaggattagggttggcacaaattgttagcaatgttattcatattagaaa |
47965599 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 52525922 - 52525990
Alignment:
| Q |
7 |
gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcata |
75 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
52525922 |
gtcagaacaatttggagccaaaaccattagaattagggttgacacaaattgttagcaatgttattcata |
52525990 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 30179071 - 30179116
Alignment:
| Q |
48 |
gcacaatttattagcaatgttattcatattagaaataagtatgata |
93 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30179071 |
gcacaatttgttagcaatgttattcatattagaaataagtatgata |
30179116 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 44841981 - 44842085
Alignment:
| Q |
91 |
ataattaagagctattggattaatcaagcacacaaattctattgg-cactctatgcattagatctttttgtctcttttctcccatcttcctctcaccttt |
189 |
Q |
| |
|
|||||| ||||| ||| ||| |||||||| |||| |||||||| ||||||||||| ||||| ||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
44841981 |
ataattgagagccattagatcaatcaagctcacacattctattatacactctatgcactagat-tttttgtctattatctgccatcttcctctcaccttt |
44842079 |
T |
 |
| Q |
190 |
tcccat |
195 |
Q |
| |
|
|||||| |
|
|
| T |
44842080 |
tcccat |
44842085 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 5228531 - 5228472
Alignment:
| Q |
105 |
ttggattaatcaagcacacaaattctattg-gcactctatgcattagatctttttgtctc |
163 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5228531 |
ttggatcaatcaagcacacaaattctattatgcactctatgcatcagatctttttgtctc |
5228472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 14866628 - 14866675
Alignment:
| Q |
46 |
tggcacaatttattagcaatgttattcatattagaaataagtatgata |
93 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
14866628 |
tggcacaatttgttaacattgttattcatattagaaataagtatgata |
14866675 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 45394091 - 45394143
Alignment:
| Q |
143 |
tgcattagatctttttgtctcttttctcccatcttcctctcaccttttcccat |
195 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||| ||| ||||||||||| |
|
|
| T |
45394091 |
tgcactagatctttttgtctgttctctcccatcttctgctccccttttcccat |
45394143 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 24538314 - 24538234
Alignment:
| Q |
12 |
aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| |||||||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
24538314 |
aacagtttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagtatgat |
24538234 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 28296914 - 28296968
Alignment:
| Q |
38 |
attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
28296914 |
attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat |
28296968 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 22142305 - 22142349
Alignment:
| Q |
38 |
attagggttggcacaatttattagcaatgttattcatattagaaa |
82 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
22142305 |
attagggttggcacaatttgttaacaatgctattcatattagaaa |
22142349 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 20606866 - 20606820
Alignment:
| Q |
136 |
cactctatgcattagatctttttgtctcttttctcccatcttcctct |
182 |
Q |
| |
|
|||| |||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
20606866 |
cactatatgcactagatctttttatctcttctctcccatcttcctct |
20606820 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 7828940 - 7828981
Alignment:
| Q |
51 |
caatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
7828940 |
caatttgttaacattgttattcatattagaaataagtatgat |
7828981 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 3625271 - 3625223
Alignment:
| Q |
2 |
caacagtcagaacagtttggagccaaaaccattagaattagggttggca |
50 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
3625271 |
caacagtcaaaaatgtttggagccaaaaccattaggtttagggttggca |
3625223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 27965214 - 27965297
Alignment:
| Q |
12 |
aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttatt--catattagaaataagtatgata |
93 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
27965214 |
aacagtttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttatttatatattagaaataagtatgata |
27965297 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45824656 - 45824591
Alignment:
| Q |
17 |
tttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaa |
82 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| || ||||||||| |||| ||||||||| |
|
|
| T |
45824656 |
tttggagccaaaactatcagaattagggttggcacaaattgttagcaatgctattgctattagaaa |
45824591 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 26000095 - 26000016
Alignment:
| Q |
16 |
gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa |
94 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||| ||| ||| || ||||||| ||||||||||||||| ||||| |
|
|
| T |
26000095 |
gtttggagccaaaaccatttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagataa |
26000016 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 18196188 - 18196125
Alignment:
| Q |
34 |
tagaattagggttggcacaatttattagcaatgttatt-catattagaaataagtatgataatt |
96 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
18196188 |
tagaattagggttggcacactttgttagcaattttattattttttagaaataagtatgataatt |
18196125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 30581211 - 30581165
Alignment:
| Q |
136 |
cactctatgcattagatctttttgtctcttttctcccatcttcctct |
182 |
Q |
| |
|
|||| |||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
30581211 |
cactatatgcactagatctttttatctcttctctcccatcttcctct |
30581165 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 9852174 - 9852103
Alignment:
| Q |
18 |
ttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtat |
89 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
9852174 |
ttggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagtat |
9852103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 29279827 - 29279773
Alignment:
| Q |
38 |
attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
29279827 |
attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat |
29279773 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 20602300 - 20602214
Alignment:
| Q |
7 |
gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata |
93 |
Q |
| |
|
||||||| ||||||||||||||||||| | || ||||||||||||| || ||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
20602300 |
gtcagaatagtttggagccaaaaccatcaagatgagggttggcacaaattgttaacaatgttattcatattagaattaaatatgata |
20602214 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 29308747 - 29308693
Alignment:
| Q |
38 |
attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
|||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29308747 |
attaaggttgacacaatttgttaacaatgttattcatattagaaataagtatgat |
29308693 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 5933836 - 5933893
Alignment:
| Q |
34 |
tagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatga |
91 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||||||| |||||||| ||||| |
|
|
| T |
5933836 |
tagaattagggttggcacactttgttagcaatattattcatatcagaaataaatatga |
5933893 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 44621401 - 44621480
Alignment:
| Q |
16 |
gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa |
94 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| |||| ||| ||| || ||||||| ||||||||||||||| ||||| |
|
|
| T |
44621401 |
gttttgagccaaaaccatttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagataa |
44621480 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10499 - 10558
Alignment:
| Q |
33 |
ttagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat |
92 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| ||||||||||||||| |||| |
|
|
| T |
10499 |
ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat |
10558 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 34509381 - 34509454
Alignment:
| Q |
16 |
gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagta |
88 |
Q |
| |
|
|||||||||||||| |||| || |||||||||| |||| ||| ||| || ||||||| ||||||||||||||| |
|
|
| T |
34509381 |
gtttggagccaaaatcatttaggattagggttgacacattttcttaacattgttattagtattagaaataagta |
34509454 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 1690 - 1742
Alignment:
| Q |
33 |
ttagaattagggttggcacaatttattagcaatgttattcatattagaaataa |
85 |
Q |
| |
|
|||| |||||||||||||||| | ||| || ||||||||||||||||||||| |
|
|
| T |
1690 |
ttaggattagggttggcacaaaatgttaacattgttattcatattagaaataa |
1742 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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