View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_high_72 (Length: 233)

Name: NF14404_high_72
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_high_72
NF14404_high_72
[»] chr3 (7 HSPs)
chr3 (12-92)||(4737774-4737854)
chr3 (9-92)||(32077466-32077549)
chr3 (22-89)||(5578150-5578217)
chr3 (7-92)||(51646882-51646967)
chr3 (3-93)||(46835521-46835611)
chr3 (7-94)||(45640678-45640765)
chr3 (33-92)||(15451633-15451692)
[»] chr8 (4 HSPs)
chr8 (18-92)||(14836396-14836470)
chr8 (17-93)||(30850193-30850269)
chr8 (9-92)||(27229234-27229318)
chr8 (91-190)||(38883295-38883397)
[»] chr4 (7 HSPs)
chr4 (8-82)||(47965525-47965599)
chr4 (7-75)||(52525922-52525990)
chr4 (48-93)||(30179071-30179116)
chr4 (91-195)||(44841981-44842085)
chr4 (105-163)||(5228472-5228531)
chr4 (46-93)||(14866628-14866675)
chr4 (143-195)||(45394091-45394143)
[»] chr2 (6 HSPs)
chr2 (12-92)||(24538234-24538314)
chr2 (38-92)||(28296914-28296968)
chr2 (38-82)||(22142305-22142349)
chr2 (136-182)||(20606820-20606866)
chr2 (51-92)||(7828940-7828981)
chr2 (2-50)||(3625223-3625271)
[»] chr7 (5 HSPs)
chr7 (12-93)||(27965214-27965297)
chr7 (17-82)||(45824591-45824656)
chr7 (16-94)||(26000016-26000095)
chr7 (34-96)||(18196125-18196188)
chr7 (136-182)||(30581165-30581211)
[»] chr6 (2 HSPs)
chr6 (18-89)||(9852103-9852174)
chr6 (38-92)||(29279773-29279827)
[»] chr1 (4 HSPs)
chr1 (7-93)||(20602214-20602300)
chr1 (38-92)||(29308693-29308747)
chr1 (34-91)||(5933836-5933893)
chr1 (16-94)||(44621401-44621480)
[»] scaffold0071 (1 HSPs)
scaffold0071 (33-92)||(10499-10558)
[»] chr5 (1 HSPs)
chr5 (16-88)||(34509381-34509454)
[»] scaffold0596 (1 HSPs)
scaffold0596 (33-85)||(1690-1742)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 4737774 - 4737854
Alignment:
12 aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
4737774 aacagtttggagccaaaaccattagaattagggttggcacaatttgttagcaatgttattcatattagaaataagtatgat 4737854  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 32077466 - 32077549
Alignment:
9 cagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||||||||| |  ||||||||||||| || || |||||||||||||||||||||||||||||||||||    
32077466 cagaacagtttggagccaaaaccatcaagattagggttggcataaattgttagcaatgttattcatattagaaataagtatgat 32077549  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 5578150 - 5578217
Alignment:
22 agccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtat 89  Q
    |||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||    
5578150 agccaaaaccatcagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 5578217  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 51646967 - 51646882
Alignment:
7 gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||| ||||||||||||||| ||| |  |||||||||| ||||| || ||| |||||||||||||||||||||||||||||||    
51646967 gtcagaatagtttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagtatgat 51646882  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 46835521 - 46835611
Alignment:
3 aacagtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||| || ||||||||| |||||||||||| |  |||||||||| |||||||| |||  | |||||||||||||||||||||||||||||    
46835521 aacagccacaacagtttgaagccaaaaccatcaagattagggttgacacaatttgttaatattgttattcatattagaaataagtatgata 46835611  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 45640678 - 45640765
Alignment:
7 gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa 94  Q
    ||||||||  |||||||||||||||||||| |||||||||| |||||||| ||| || ||||||| |||||||| |||| || |||||    
45640678 gtcagaactatttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataaataagataa 45640765  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 15451692 - 15451633
Alignment:
33 ttagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||||||||||||||| ||| ||| ||||||||||||   ||||||||||||||| ||||    
15451692 ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat 15451633  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 14836470 - 14836396
Alignment:
18 ttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||||||||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||    
14836470 ttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtatgat 14836396  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 30850193 - 30850269
Alignment:
17 tttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||||||||||| |||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
30850193 tttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgata 30850269  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 27229318 - 27229234
Alignment:
9 cagaacagtttggagccaaaaccatta-gaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||| ||||||||||||| ||||| |||||||||||| | ||| |||||| ||||| |||||||||||||||||||||||||    
27229318 cagaacaatttggagccaaaatcattaagaattagggttgacgcaaattattaacaatgctattcatattagaaataagtatgat 27229234  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 38883295 - 38883397
Alignment:
91 ataattaagagctattggattaatcaagcacacaaattctattgg-cactctatgcattagatcttttt--gtctcttttctcccatcttcctctcacct 187  Q
    |||||||||||||||| ||| |||||||  |||| ||||||| |  ||||| || || ||||| |||||  ||||||| |||||||||||||||||||||    
38883295 ataattaagagctattagatcaatcaagatcacatattctatcgtacactccatacaatagatatttttctgtctcttctctcccatcttcctctcacct 38883394  T
188 ttt 190  Q
    |||    
38883395 ttt 38883397  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 47965525 - 47965599
Alignment:
8 tcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaa 82  Q
    |||||||||||||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||||    
47965525 tcagaacagtttggagccaaaaccatcaggattagggttggcacaaattgttagcaatgttattcatattagaaa 47965599  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 52525922 - 52525990
Alignment:
7 gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcata 75  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||    
52525922 gtcagaacaatttggagccaaaaccattagaattagggttgacacaaattgttagcaatgttattcata 52525990  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 30179071 - 30179116
Alignment:
48 gcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
30179071 gcacaatttgttagcaatgttattcatattagaaataagtatgata 30179116  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 44841981 - 44842085
Alignment:
91 ataattaagagctattggattaatcaagcacacaaattctattgg-cactctatgcattagatctttttgtctcttttctcccatcttcctctcaccttt 189  Q
    |||||| ||||| ||| ||| |||||||| |||| ||||||||   ||||||||||| ||||| ||||||||| || ||| |||||||||||||||||||    
44841981 ataattgagagccattagatcaatcaagctcacacattctattatacactctatgcactagat-tttttgtctattatctgccatcttcctctcaccttt 44842079  T
190 tcccat 195  Q
    ||||||    
44842080 tcccat 44842085  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 5228531 - 5228472
Alignment:
105 ttggattaatcaagcacacaaattctattg-gcactctatgcattagatctttttgtctc 163  Q
    |||||| ||||||||||||||||||||||  ||||||||||||| |||||||||||||||    
5228531 ttggatcaatcaagcacacaaattctattatgcactctatgcatcagatctttttgtctc 5228472  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 14866628 - 14866675
Alignment:
46 tggcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||||||||| ||| || |||||||||||||||||||||||||||||    
14866628 tggcacaatttgttaacattgttattcatattagaaataagtatgata 14866675  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 45394091 - 45394143
Alignment:
143 tgcattagatctttttgtctcttttctcccatcttcctctcaccttttcccat 195  Q
    |||| ||||||||||||||| || ||||||||||||  ||| |||||||||||    
45394091 tgcactagatctttttgtctgttctctcccatcttctgctccccttttcccat 45394143  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 24538314 - 24538234
Alignment:
12 aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||| ||| || ||||||||||||||||||||||||||||    
24538314 aacagtttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagtatgat 24538234  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 28296914 - 28296968
Alignment:
38 attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||    
28296914 attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat 28296968  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 22142305 - 22142349
Alignment:
38 attagggttggcacaatttattagcaatgttattcatattagaaa 82  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||    
22142305 attagggttggcacaatttgttaacaatgctattcatattagaaa 22142349  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 20606866 - 20606820
Alignment:
136 cactctatgcattagatctttttgtctcttttctcccatcttcctct 182  Q
    |||| |||||| ||||||||||| |||||| ||||||||||||||||    
20606866 cactatatgcactagatctttttatctcttctctcccatcttcctct 20606820  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 7828940 - 7828981
Alignment:
51 caatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||||| ||| || ||||||||||||||||||||||||||||    
7828940 caatttgttaacattgttattcatattagaaataagtatgat 7828981  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 3625271 - 3625223
Alignment:
2 caacagtcagaacagtttggagccaaaaccattagaattagggttggca 50  Q
    ||||||||| ||  |||||||||||||||||||||  ||||||||||||    
3625271 caacagtcaaaaatgtttggagccaaaaccattaggtttagggttggca 3625223  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 27965214 - 27965297
Alignment:
12 aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttatt--catattagaaataagtatgata 93  Q
    |||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||||||   |||||||||||||||||||||    
27965214 aacagtttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttatttatatattagaaataagtatgata 27965297  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45824656 - 45824591
Alignment:
17 tttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaa 82  Q
    |||||||||||||| || ||||||||||||||||||| || ||||||||| ||||  |||||||||    
45824656 tttggagccaaaactatcagaattagggttggcacaaattgttagcaatgctattgctattagaaa 45824591  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 26000095 - 26000016
Alignment:
16 gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa 94  Q
    ||||||||||||||||||| || |||||||||| |||| ||| ||| || |||||||  ||||||||||||||| |||||    
26000095 gtttggagccaaaaccatttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagataa 26000016  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 18196188 - 18196125
Alignment:
34 tagaattagggttggcacaatttattagcaatgttatt-catattagaaataagtatgataatt 96  Q
    ||||||||||||||||||| ||| |||||||| |||||   | |||||||||||||||||||||    
18196188 tagaattagggttggcacactttgttagcaattttattattttttagaaataagtatgataatt 18196125  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 30581211 - 30581165
Alignment:
136 cactctatgcattagatctttttgtctcttttctcccatcttcctct 182  Q
    |||| |||||| ||||||||||| |||||| ||||||||||||||||    
30581211 cactatatgcactagatctttttatctcttctctcccatcttcctct 30581165  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 9852174 - 9852103
Alignment:
18 ttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtat 89  Q
    ||||||||||||  ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||    
9852174 ttggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagtat 9852103  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 29279827 - 29279773
Alignment:
38 attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||    
29279827 attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat 29279773  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 20602300 - 20602214
Alignment:
7 gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||||| ||||||||||||||||||| |  || ||||||||||||| || ||| |||||||||||||||||||| ||| |||||||    
20602300 gtcagaatagtttggagccaaaaccatcaagatgagggttggcacaaattgttaacaatgttattcatattagaattaaatatgata 20602214  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 29308747 - 29308693
Alignment:
38 attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||    
29308747 attaaggttgacacaatttgttaacaatgttattcatattagaaataagtatgat 29308693  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 5933836 - 5933893
Alignment:
34 tagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatga 91  Q
    ||||||||||||||||||| ||| |||||||| |||||||||| |||||||| |||||    
5933836 tagaattagggttggcacactttgttagcaatattattcatatcagaaataaatatga 5933893  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 44621401 - 44621480
Alignment:
16 gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa 94  Q
    |||| |||||||||||||| || |||||||||| |||| ||| ||| || |||||||  ||||||||||||||| |||||    
44621401 gttttgagccaaaaccatttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagataa 44621480  T

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Target: scaffold0071 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10499 - 10558
Alignment:
33 ttagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||||||||||||||| ||| ||| ||||||||||||   ||||||||||||||| ||||    
10499 ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat 10558  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 34509381 - 34509454
Alignment:
16 gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagta 88  Q
    |||||||||||||| |||| || |||||||||| |||| ||| ||| || |||||||  |||||||||||||||    
34509381 gtttggagccaaaatcatttaggattagggttgacacattttcttaacattgttattagtattagaaataagta 34509454  T

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Target: scaffold0596 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 1690 - 1742
Alignment:
33 ttagaattagggttggcacaatttattagcaatgttattcatattagaaataa 85  Q
    |||| ||||||||||||||||  | ||| || |||||||||||||||||||||    
1690 ttaggattagggttggcacaaaatgttaacattgttattcatattagaaataa 1742  T

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