View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_11 (Length: 513)
Name: NF14404_low_11
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 199 - 497
Target Start/End: Complemental strand, 43259619 - 43259321
Alignment:
| Q |
199 |
gtttatttgaatcctgttggacattaaaataaattttatctcaatcagattcaaacgttgatattccatgccacaatcgcttatgctattttgctaaatc |
298 |
Q |
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| T |
43259619 |
gtttatttgaatcctgttggacattaaaataaattttatctcaatcggattcaaacgttgatattccatgccacaatagcttatgctattttgctaaatc |
43259520 |
T |
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| Q |
299 |
cagcctccatcgatcttaaatttgttttaatcttaaatgatatattatcaaccgcggtcataacacttaatttaaagtatatctctcatattatcaactt |
398 |
Q |
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| T |
43259519 |
cagcctccatcgatcttaaatttgttttaatcttaaatgatatattatcaaccgcggtcataacacttaatttaaagtatatctctcatattatcaactt |
43259420 |
T |
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| Q |
399 |
attatcttacgttcataattacatttctaatgataaaaaactatagaaatctttgatatgttagagatgctgattgaaatctgtaattttccatctttt |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259419 |
attatcttacgttcataattacatttctaatgataaaaaactatagaaatctttgatatgttagagatgctgattgaaatctgtaattttccatctttt |
43259321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 43259788 - 43259671
Alignment:
| Q |
1 |
gatgatcataggagacttatttctctcgtcttgttccatagtttcgtcgaaatatttttcttttatagaaaaaggttgtatctatttcacttatgtgctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43259788 |
gatgatcataggagacttatttctctcgtcttgttccatagtttcgttgaaatatttttcttttatagaaaaaggttgtatcta-ttcacttatgtgctt |
43259690 |
T |
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| Q |
101 |
tatccatattataaaataa |
119 |
Q |
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||||||||||||||||||| |
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| T |
43259689 |
tatccatattataaaataa |
43259671 |
T |
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