View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_12 (Length: 498)
Name: NF14404_low_12
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 215 - 480
Target Start/End: Complemental strand, 30319782 - 30319521
Alignment:
| Q |
215 |
atggttaggaaggaaagtgttctagtttttaagaattatatctatgcaatgcaacactctaactaatatataatagcataaaattacaacaacaattcaa |
314 |
Q |
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| T |
30319782 |
atggttaggaaggaaagtgttctagtttttaagaattatatctatgcaatgcaacactctaactaata----atagcataaaattacaacaacaattcaa |
30319687 |
T |
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| Q |
315 |
ttcctcaagatattatactcgttcctctttcatattgctcattttcttcaaatgactttggtttgttcctagacttggaagatggagattcatactccat |
414 |
Q |
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| T |
30319686 |
ttcctcaagatattatactcgttcctctttcatattgctcattttcttcaaatgactttggtttgttcctagacttggaagatggagattcatactccaa |
30319587 |
T |
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| Q |
415 |
attaggatctgatgattgttgtgctttggatctcaatttggatgatgatccaccacctgaattttc |
480 |
Q |
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| T |
30319586 |
attaggatctgatgattgttgtgctttggatctcaatttggatgatgatccaccacctgaattttc |
30319521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 30319994 - 30319853
Alignment:
| Q |
18 |
cccatgaggtgaacacctacgtagaattcttcaacatttgcaatttatcttaaacaaatcaatgaaaactaaagtgaacaagttgcactagttagtaaat |
117 |
Q |
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| T |
30319994 |
cccataaggtgaacacctacgtagaattcttcaacatttgcaatttatcttaaacaaatcaatgaaaactaaagtgaacaagttgcactagttagtaaat |
30319895 |
T |
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| Q |
118 |
tacatatcagcaatgggtaaataatac-aagactttctattt |
158 |
Q |
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| T |
30319894 |
tacatatcagcaatgggtaaataatacaaagactttctattt |
30319853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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