View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_16 (Length: 455)
Name: NF14404_low_16
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Original strand, 47716950 - 47717384
Alignment:
| Q |
7 |
catgtccaagaatattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcatcattatc |
106 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47716950 |
catgtccaagtttattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatc |
47717049 |
T |
|
| Q |
107 |
atcttctatatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatttttaaaatcaaaatacttataacaattggcttccattttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47717050 |
atcttctatatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatttttaaaatcaaaatacttataactattggcttccattttt |
47717149 |
T |
|
| Q |
207 |
ctttgccatctgtttcttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattt |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47717150 |
ctttgccatctgtctcttttggaattactgcttctaggttgtctctatttgaatgcaaaactctgttaaccatcacaacttattattatgaagtaaattt |
47717249 |
T |
|
| Q |
307 |
tatgtcgtcaaaattatcctgcattcataccacgacttagacagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttcctttt |
406 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717250 |
tatgtcgtcaaaattatcctgcatccataccacgacttagacagtctaacaaatttaggaaaggtcacataccttcgagatttatctttgccttcctttt |
47717349 |
T |
|
| Q |
407 |
ccttacgcatatgcaaatgaaaattagcagggaag |
441 |
Q |
| |
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| T |
47717350 |
ccttacgcatatgcaaatgaaaattagcagggaag |
47717384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 437
Target Start/End: Original strand, 47744743 - 47745170
Alignment:
| Q |
7 |
catgtccaagaatattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcatcattatc |
106 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| || |
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| T |
47744743 |
catgtccaagtttattatcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgacgcagtgatttcaatatcattattttc |
47744842 |
T |
|
| Q |
107 |
atcttct---atatcttcaaacaatgtacaaggcatgttagaaaaatatgctaatatctaatttttaaaatcaaaatacttataacaattggcttccatt |
203 |
Q |
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||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || || || |||||||||| |
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| T |
47744843 |
atcttcttttatatcttcaaacattgtacaaggcatgttaggaaaatatgctaatatctaatttttaaaatcaaaca--ttgtacaaa--ggcttccatt |
47744938 |
T |
|
| Q |
204 |
tttctttgccatctgtttcttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaa |
303 |
Q |
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| T |
47744939 |
tttctttgccttctgtctatttttgaattactgcatctaggttttctctttttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaga |
47745038 |
T |
|
| Q |
304 |
ttttatgtcgtcaaaattatcctgcattcataccacgacttagacagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttcct |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||| |||||| ||||||||||||||||||||| |
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| T |
47745039 |
ttttatgtcgtcaaaattatcctgcattcataccacgacttagacag--taacgaatttagacaaagtcacgtaccttggagatttatctttgccttcct |
47745136 |
T |
|
| Q |
404 |
tttccttacgcatatgcaaatgaaaattagcagg |
437 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |
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| T |
47745137 |
tttccttaagcatatgcaaatgaaaattagcagg |
47745170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 47712195 - 47712524
Alignment:
| Q |
7 |
catgtccaagaatattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcatcattatc |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47712195 |
catgtccaagtttattagcttcagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcagcgatttcaatatcatcattatc |
47712294 |
T |
|
| Q |
107 |
a---tcttctatatcttcaaacaatgtacaaggcatgt--------------tagaaaaatatgctaatatctaatttttaaaatcaaaatacttataac |
189 |
Q |
| |
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| |||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| || |
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| T |
47712295 |
attttcttctatttcttcaaacatgatacaaggcatgttagtaaagtaaaaatagaaaaatatgctaatatctaatttttaaaataaaaaaacttatgac |
47712394 |
T |
|
| Q |
190 |
aattggcttccatttttctttgccatctgtt-tcttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaactta |
288 |
Q |
| |
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|||||| ||||||||||||| || | | || | |||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47712395 |
tattggcgtccatttttctttccctttttttctatttttgaattattgcatctaggttttctctatttgaatgcaaaa---tgttaaccatcacaactta |
47712491 |
T |
|
| Q |
289 |
ttat--tatgaagtaaattttatgtcgtcaaaa |
319 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||| |
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| T |
47712492 |
ttattatatgaagtagattttatgtcttcaaaa |
47712524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 223 - 438
Target Start/End: Original strand, 47759276 - 47759497
Alignment:
| Q |
223 |
ttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaa----- |
317 |
Q |
| |
|
|||| |||||||| | ||||| |||| | |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||| |
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| T |
47759276 |
tttttgaattactacatctagttttttt-tatttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactc |
47759374 |
T |
|
| Q |
318 |
--aattatcctgcattcataccacgacttagacagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttccttttccttacgca |
415 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||| |||||||| || |||||| |||||||||||||||| |||||||||||||||||| ||| |
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| T |
47759375 |
aaaattatcctgagttcataccacgatttagacagtctactgaatttagacaaagtcacacaccttcgagatttatccttgccttccttttccttaagca |
47759474 |
T |
|
| Q |
416 |
tatgcaaatgaaaattagcaggg |
438 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
47759475 |
tatgcaaataaaaattagcaggg |
47759497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 47759093 - 47759233
Alignment:
| Q |
7 |
catgtccaagaatattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcatcattatc |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| || |||||||||||||| || |
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| T |
47759093 |
catgtccaagtttattagcttcagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtc |
47759192 |
T |
|
| Q |
107 |
atcttct---atatcttcaaacaatg-tacaaggcatgttag |
144 |
Q |
| |
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|||||| || |||||||| |||| ||||||||||||||| |
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| T |
47759193 |
gtcttcttcgatttcttcaaa-aatgatacaaggcatgttag |
47759233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 337
Target Start/End: Original strand, 47713896 - 47714004
Alignment:
| Q |
230 |
attactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcaca--acttattattatgaagtaaattttatgtcgtcaaaattat--cc |
325 |
Q |
| |
|
|||||||| |||||||||| | |||||||| |||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||| || |
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| T |
47713896 |
attactgcatctaggttttttatatttgaaagcaacgctttgttaatcatcacacaacttattattatgaag---attttatgtcgtcaaaactatagcc |
47713992 |
T |
|
| Q |
326 |
tgcattcatacc |
337 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47713993 |
tgcattcatacc |
47714004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 47712559 - 47712602
Alignment:
| Q |
395 |
tgccttccttttccttacgcatatgcaaatgaaaattagcaggg |
438 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
47712559 |
tgccttccttttccttaagcatatgcaaatgaaaattagcaggg |
47712602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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