View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_17 (Length: 449)
Name: NF14404_low_17
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 10598553 - 10598971
Alignment:
| Q |
13 |
atcatcatgatgaatgaaaaggaatcagaagaaaatcttgcacagcaagcaacaaaagctgatgttcaagacactgctgacagagaaccaaccggtataa |
112 |
Q |
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| T |
10598553 |
atcataatgatgaatgaaaaggaaccagaagaaaagcttgcacagcaagaaacaaaagctgatgttcaagacactgctgacagagaaccaaccggtacaa |
10598652 |
T |
|
| Q |
113 |
aaacgaaagtatctgcagatttgaatggtgacatgagattactggaagagaatgagaagctaaggaagctgatgaaggagttgcttgaagctgggaatga |
212 |
Q |
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| T |
10598653 |
aaacgaaagtatctgcagatttgaatggtgacatgagattactggaagagaatgagaagctaaggaagctgatgaaggagttgcttgaagctgggaatga |
10598752 |
T |
|
| Q |
213 |
acagataagtgtaatatcaaatttgactgggagagtaaaagatttggagaagaaactagccaaaactaaaaggagtaagaaagtgaggacaaagagacat |
312 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598753 |
acagataagtgtaatatcaactttgactgggagagtaaaagatttggagaagaaactagccaaaactaaaaggagtaagaaagtgaggacaaagagacat |
10598852 |
T |
|
| Q |
313 |
aaaccagtaactcccaaaatgtcttggtcaatgtcttgttcaaactcttctgagtaatcatgtgaatgtggattttgtatgtaatggcggcatggtatga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598853 |
aaaccagtaactcccaaaatgtcttggtcaatgtcttgttcaaactcttctgagtaatcatgtgaatgtggattttgtatgtaatggcggcatggtatga |
10598952 |
T |
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| Q |
413 |
gtcttgttgtattgataat |
431 |
Q |
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||||||||||||||||||| |
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| T |
10598953 |
gtcttgttgtattgataat |
10598971 |
T |
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