View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14404_low_20 (Length: 418)
Name: NF14404_low_20
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 33866303 - 33865915
Alignment:
| Q |
13 |
caaaggcaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaatatcaagtaagaacccgaaagaaattgaaa |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866303 |
caaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaatatcaagtaagaacccgaaagaaattgaaa |
33866204 |
T |
|
| Q |
113 |
atggtggtcatctcttagtcttaccttnnnnnnnntagcatgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgagcatgtaacgaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866203 |
atggtggtcatctcttagtcttaccttaaaaaaa-tagcatgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgagcatgtaacgaca |
33866105 |
T |
|
| Q |
213 |
acagctgacgaaattaatcaatgggataggaattgagcaagaatcgcaaatcagttccttaaaggctgaggcacacaataaaaacgtaatctactccatc |
312 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33866104 |
aaagctgacgaaattaatcaatgggataggaattgagcaagaatcgcaaatcagttccttaaaggctgaggtacacaataaaaacgtaatctactccatc |
33866005 |
T |
|
| Q |
313 |
tttgtcttctccggattcgtcacttgtgatatcgtcacttggttttttagaagggtaactggagtgagagagaagagggaccgaaaatgg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33866004 |
tttgtcttctccggattcgtcacttgtgatatcgtcacttgattttttagaagggtaactggagtgagagagaagagggactgaaaatgg |
33865915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 23216389 - 23216779
Alignment:
| Q |
13 |
caaaggcaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaatatcaagtaagaacccgaaagaaattgaaa |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23216389 |
caaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaagagtagaaatagatgaataaaaaatatcaagtaagaacccgaaagaaattgaaa |
23216488 |
T |
|
| Q |
113 |
atggtggtcatctcttagtcttaccttnnnnnnnntagcatgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgagcatgtaacgaca |
212 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23216489 |
atggtggtcatctcttaatcttaccttaaaaaaa-tagcgtgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgaacatgtaacgaca |
23216587 |
T |
|
| Q |
213 |
acagctgacgaaattaatcaatgggataggaattgagcaagaatcgcaaatcagttccttaaaggctgaggcacacaataaaaacgtaatctactccatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
23216588 |
taagctgacgaaattaatcaatgggataggaattgagcaagaaccgcaaatcagttccttaaaggccgaggcacacaataaaaacgtaatcttctccatc |
23216687 |
T |
|
| Q |
313 |
tttgtcttctccggattcgtcacttgtgatatcgtcacttggttttttagaagggtaactggagt--gagagagaagagggaccgaaaatgg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
23216688 |
tttgtcttctccggattcgtcacttgtgatatcgtcacttggttttttagaagggtaactggagtgagagagagaagagggactgaaaatgg |
23216779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 23216292 - 23216341
Alignment:
| Q |
13 |
caaaggcaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagt |
62 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23216292 |
caaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaanagt |
23216341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 30765754 - 30765797
Alignment:
| Q |
355 |
ttttttagaagggtaactggagtgagagagaagagggaccgaaa |
398 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
30765754 |
ttttttagcagggaaactggagtgagagagaagagggactgaaa |
30765797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 11075576 - 11075202
Alignment:
| Q |
13 |
caaaggcaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaa-tatcaagtaagaacccgaaagaaattgaa |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11075576 |
caaagacaaccctgatcaaacacatggtgtgcgctcagaatgtgaatagtagaaatagatgaataaaaaaatatcaagtaagaacccgaaagaaattgaa |
11075477 |
T |
|
| Q |
112 |
aatggtggtcatctcttagtcttaccttnnnnnnnntagcatgtgtcgagaagaacaactctgttgccggaaacacatggtgaattgagcatgtaacgac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11075476 |
aatggtggtcatctcttagtcttaccttaaaaata-tagcgtgagtcgagaagaacaattctgttgccggaaacacatggtgaattgagcatgtaacgac |
11075378 |
T |
|
| Q |
212 |
aacagctgacgaaattaatcaatgggataggaattgagcaagaatcgcaaatcagttccttaaaggctgaggcacacaataaaaacgtaatctactccat |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11075377 |
aaaagctgacgaaattaatcaatgggatagaaattgagcaagaaccgcaaatcagaaccttaaaggctgaggcacacaataaaaacgtaatcttctccat |
11075278 |
T |
|
| Q |
312 |
ctttgtcttctccggattcgtcacttgtgatatcgtcacttggttttttagaagggtaactggagtgagagagaagagggaccgaaaatgg |
402 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11075277 |
ctttgtcttctccagattcgtca---------------cttggttttttagaagggtaactggagtgagagagaagagggactgaaaatgg |
11075202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University