View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_low_21 (Length: 412)

Name: NF14404_low_21
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_low_21
NF14404_low_21
[»] chr2 (5 HSPs)
chr2 (1-394)||(4923644-4924033)
chr2 (3-42)||(5539069-5539108)
chr2 (7-42)||(8198412-8198447)
chr2 (7-42)||(8203172-8203207)
chr2 (10-59)||(45385920-45385969)
[»] chr8 (4 HSPs)
chr8 (7-54)||(45445256-45445303)
chr8 (7-60)||(8452995-8453048)
chr8 (16-53)||(13800928-13800965)
chr8 (3-51)||(38099096-38099144)
[»] chr6 (4 HSPs)
chr6 (3-58)||(33547727-33547782)
chr6 (3-60)||(16419898-16419955)
chr6 (9-55)||(16419577-16419623)
chr6 (7-60)||(12458457-12458510)
[»] chr4 (3 HSPs)
chr4 (3-56)||(33617959-33618012)
chr4 (1-53)||(22889568-22889620)
chr4 (1-53)||(22941232-22941284)
[»] chr3 (1 HSPs)
chr3 (3-58)||(29835482-29835537)
[»] chr7 (3 HSPs)
chr7 (6-40)||(12264733-12264767)
chr7 (3-35)||(30552007-30552039)
chr7 (9-57)||(41331394-41331442)
[»] chr5 (2 HSPs)
chr5 (16-58)||(31480787-31480829)
chr5 (3-55)||(26325930-26325982)
[»] chr1 (3 HSPs)
chr1 (16-58)||(47035979-47036021)
chr1 (3-60)||(802314-802371)
chr1 (3-35)||(16554304-16554336)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 4923644 - 4924033
Alignment:
Q  1 ttaaggaccaatttattacaattaaataacataaaggacctctaatataatttagcctaattaataactatggaagcctttaaaatctctatactttgta 100  Q
    ||||||||||||||||||||||||||||||     ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  4923644 ttaaggaccaatttattacaattaaataact----ggacctctactataatttaacctaattaataactatggaagcctttaaaatctctatattttgta 4923739  T
Q  101 ggcatataaactagagctacacctaaatatctctagannnnnnnataatcaatcactaacattaaatacttctagaattttcccatgttataagataaat 200  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4923740 ggcatataaactagagctacacctaaatatctctagatttttttataatcaatcactaacattaaatacttctagaattttcccatgtgataagataaat 4923839  T
Q  201 ccttgcaaatggtataaataaattaagctatataatcacgaaacattttgccaatcaagtaacaagtttcttagagaaattagagaattctctatttctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4923840 ccttgcaaatggtataaataaattaagctatataatcacgaaacattttgccaatcaagtaacaagtttcttagagaaattagagaattctctatttctc 4923939  T
Q  301 tacctatcattatgttcctgagtgaggtaacctatgagaaacgaagaaaaaagaaacttttaaattaattttggatcaaaatcaaaagcatata 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||    
T  4923940 tacctatcattatgttcctgagtgaggtaacctatgagaaacgaagaaaaaataaacttttaatttcattatggatcaaaatcaaaagcatata 4924033  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 5539108 - 5539069
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaaggacctc 42  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  5539108 aaggaccaatttattacaattaaatagcttaaaggacctc 5539069  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 8198447 - 8198412
Alignment:
Q  7 accaatttattacaattaaataacataaaggacctc 42  Q
    |||||||||||||||||||||||| |||||||||||    
T  8198447 accaatttattacaattaaataacttaaaggacctc 8198412  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 8203207 - 8203172
Alignment:
Q  7 accaatttattacaattaaataacataaaggacctc 42  Q
    |||||||||||||||||||||||| |||||||||||    
T  8203207 accaatttattacaattaaataacttaaaggacctc 8203172  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 45385920 - 45385969
Alignment:
Q  10 aatttattacaattaaataacataaaggacctctaatataatttagccta 59  Q
    ||||| || |||||||||||| ||||||||||||| | ||||||||||||    
T  45385920 aatttgttccaattaaataacttaaaggacctctagtgtaatttagccta 45385969  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 45445256 - 45445303
Alignment:
Q  7 accaatttattacaattaaataacataaaggacctctaatataattta 54  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  45445256 accaatttattacaattaaataacttaaaggacatctaaaataattta 45445303  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 8453048 - 8452995
Alignment:
Q  7 accaatttattacaattaaataacataaaggacctctaatataatttagcctaa 60  Q
    |||||||||| ||||| ||||||| ||||||| ||||| | |||||||||||||    
T  8453048 accaatttatcacaatgaaataacgtaaaggatctctagtgtaatttagcctaa 8452995  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 13800965 - 13800928
Alignment:
Q  16 ttacaattaaataacataaaggacctctaatataattt 53  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  13800965 ttacaaataaataagataaaggacctctaatataattt 13800928  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 38099096 - 38099144
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaaggacctctaatataat 51  Q
    ||||||||| || |||||| ||||||| |||||||||||||||| ||||    
T  38099096 aaggaccaaattgttacaaataaataagataaaggacctctaatgtaat 38099144  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 33547782 - 33547727
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaaggacctctaatataatttagcct 58  Q
    |||||||||||| ||||||||||||||| ||||||||||||| |  ||||||||||    
T  33547782 aaggaccaatttgttacaattaaataacttaaaggacctctagtgaaatttagcct 33547727  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 16419898 - 16419955
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaaggacctctaatataatttagcctaa 60  Q
    |||||||||||| ||||||||||||| | |||||||||||  || |||||||||||||    
T  16419898 aaggaccaatttgttacaattaaatagcttaaaggacctccgatgtaatttagcctaa 16419955  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 16419623 - 16419577
Alignment:
Q  9 caatttattacaattaaataacataaaggacctctaatataatttag 55  Q
    |||||| ||||||||||||||| |||||||| ||| |||||||||||    
T  16419623 caatttgttacaattaaataacttaaaggacttcttatataatttag 16419577  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 12458457 - 12458510
Alignment:
Q  7 accaatttattacaattaaataacataaaggacctctaatataatttagcctaa 60  Q
    ||||| || ||||||||||||||| |||||||| |||| | |||||||||||||    
T  12458457 accaaattgttacaattaaataacttaaaggacttctagtgtaatttagcctaa 12458510  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 33617959 - 33618012
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaaggacctctaatataatttagc 56  Q
    |||||||||||||||||||||||||||| |||| |||||||  | |||||||||    
T  33617959 aaggaccaatttattacaattaaataacttaaatgacctcttgtgtaatttagc 33618012  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22889620 - 22889568
Alignment:
Q  1 ttaaggaccaatttattacaattaaataacataaaggacctctaatataattt 53  Q
    |||||||||||||||||| ||||||||||| |||| || ||||||| ||||||    
T  22889620 ttaaggaccaatttattataattaaataacttaaatgatctctaatgtaattt 22889568  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22941284 - 22941232
Alignment:
Q  1 ttaaggaccaatttattacaattaaataacataaaggacctctaatataattt 53  Q
    |||||||||||||||||| ||||||||||| |||| || ||||||| ||||||    
T  22941284 ttaaggaccaatttattataattaaataacttaaatgatctctaatgtaattt 22941232  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 29835482 - 29835537
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaaggacctctaatataatttagcct 58  Q
    |||||||||  | |||||| ||||||| ||||||||||||||||||||||| ||||    
T  29835482 aaggaccaaagtgttacaaataaataagataaaggacctctaatataattttgcct 29835537  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 12264767 - 12264733
Alignment:
Q  6 gaccaatttattacaattaaataacataaaggacc 40  Q
    ||||||||||||||||||||||||| |||||||||    
T  12264767 gaccaatttattacaattaaataacttaaaggacc 12264733  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 30552007 - 30552039
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaa 35  Q
    |||||||||||||||||||||||||||| ||||    
T  30552007 aaggaccaatttattacaattaaataacttaaa 30552039  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 41331394 - 41331442
Alignment:
Q  9 caatttattacaattaaataacataaaggacctctaatataatttagcc 57  Q
    |||||||||||||||||||||| |||| ||| | | |||||||||||||    
T  41331394 caatttattacaattaaataacttaaatgacttatgatataatttagcc 41331442  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 31480829 - 31480787
Alignment:
Q  16 ttacaattaaataacataaaggacctctaatataatttagcct 58  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||    
T  31480829 ttacaaataaataagataaaggacctctaatataattttgcct 31480787  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 26325930 - 26325982
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaaggacctctaatataatttag 55  Q
    |||||| |||||| |||||||||||||| ||||||| |||||||  |||||||    
T  26325930 aaggactaatttaatacaattaaataacttaaaggatctctaatgcaatttag 26325982  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 47035979 - 47036021
Alignment:
Q  16 ttacaattaaataacataaaggacctctaatataatttagcct 58  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||    
T  47035979 ttacaaataaataagataaaggacctctaatataattttgcct 47036021  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 802314 - 802371
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaaggacctctaatataatttagcctaa 60  Q
    |||||||||||||||||| ||||||||| |||||||| |||  | | |||||||||||    
T  802314 aaggaccaatttattacatttaaataacttaaaggacgtcttgtgtgatttagcctaa 802371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 16554336 - 16554304
Alignment:
Q  3 aaggaccaatttattacaattaaataacataaa 35  Q
    |||||||||||||||||||||||||||| ||||    
T  16554336 aaggaccaatttattacaattaaataacttaaa 16554304  T

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