View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_low_23 (Length: 409)

Name: NF14404_low_23
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_low_23
NF14404_low_23
[»] chr1 (3 HSPs)
chr1 (1-395)||(28843016-28843409)
chr1 (86-188)||(49292970-49293072)
chr1 (86-142)||(15265638-15265694)
[»] chr2 (3 HSPs)
chr2 (86-189)||(43829826-43829929)
chr2 (86-179)||(43829621-43829715)
chr2 (137-190)||(30841557-30841610)
[»] chr7 (3 HSPs)
chr7 (137-188)||(31260803-31260854)
chr7 (192-246)||(3901035-3901089)
chr7 (130-190)||(8745875-8745935)
[»] chr4 (3 HSPs)
chr4 (108-166)||(4316041-4316099)
chr4 (4-70)||(54137254-54137320)
chr4 (86-190)||(36165466-36165570)
[»] scaffold0557 (1 HSPs)
scaffold0557 (86-123)||(4656-4693)
[»] scaffold0115 (1 HSPs)
scaffold0115 (86-143)||(46087-46144)
[»] chr3 (2 HSPs)
chr3 (133-190)||(42643053-42643110)
chr3 (106-190)||(50196878-50196962)
[»] scaffold1432 (1 HSPs)
scaffold1432 (130-166)||(971-1007)
[»] chr5 (2 HSPs)
chr5 (135-179)||(28431980-28432024)
chr5 (4-64)||(33408153-33408213)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 28843409 - 28843016
Alignment:
Q  1 taccttttaggatgaaattcaaactcatttaatttgctatgagagtcggattaaggattgcaatgtgagagttggacacatgccattgtagtttgtttct 100  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28843409 taccttttaggatgaaattcaaactcatttaatttggtatcagagtcggattaaggattgcaatgtgagagttggacacatgccattgtagtttgtttct 28843310  T
Q  101 agtttcacattgctcaggttcccatattattgaatgtataaatatttttgaatatcctcatcctttaaactagtttttgagatgagatccgacaagtttc 200  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28843309 agtttcacattgatgaggttcacatattattgaatgtataaatatttttgaatatcctcatcctttaaactagtttttgagatgagatccgacaagtttc 28843210  T
Q  201 actctcctagtttgttggtcaacaacttttgatgcattattttatttggaaattgaagtttagtttgtctttggagaatatcgttaatgatccacctctt 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  28843209 actctcctagtttgttggtcaacaacttttgatgcattgttttatttggaaattgaagtttagtttgtctttggggaatatcgtcaatgatccacctctt 28843110  T
Q  301 ataggaaaacaatgttgtgttggttgtttgtgtgttggtatgctttggttaccattttccattgcaggacaatgtttgatcaaggttggttattt 395  Q
    ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||    
T  28843109 ataggaaaacaatgttgtgttggttgtttgtgt-ttggtatgctctgattaccattttccattgcaggacaatgtttgattaaggttggttattt 28843016  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 49292970 - 49293072
Alignment:
Q  86 ttgtagtttgtttctagtttcacattgctcaggttcccatattattgaatgtataaatatttttgaatatcctcatcctttaaactagtttttgagatga 185  Q
    ||||||||||||||||||  |||||||||||| |||||| | |||||| |||||||||||||||||||| |||| ||| || | |||| |||||||||||    
T  49292970 ttgtagtttgtttctagtcccacattgctcagattcccaaactattgagtgtataaatatttttgaataccctcgtcccttgagctagcttttgagatga 49293069  T
Q  186 gat 188  Q
    |||    
T  49293070 gat 49293072  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 15265638 - 15265694
Alignment:
Q  86 ttgtagtttgtttctagtttcacattgctcaggttcccatattattgaatgtataaa 142  Q
    |||||||||||||||||| ||||||||||||| |||| | ||| |||||||||||||    
T  15265638 ttgtagtttgtttctagtctcacattgctcagattcctacattgttgaatgtataaa 15265694  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 43829929 - 43829826
Alignment:
Q  86 ttgtagtttgtttctagtttcacattgctcaggttcccatattattgaatgtataaatatttttgaatatcctcatcctttaaactagtttttgagatga 185  Q
    ||||||||||||||||||  ||||||||||||||||||| ||  |||| |||| ||||||  |||| || |||||||| || | |||| | ||| |||||    
T  43829929 ttgtagtttgtttctagtcccacattgctcaggttcccagatcgttgagtgtagaaatatgcttgagtaccctcatccattgagctagctgttgggatga 43829830  T
Q  186 gatc 189  Q
    ||||    
T  43829829 gatc 43829826  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 43829715 - 43829621
Alignment:
Q  86 ttgtagtttgtttctagtttcacattgctcagg-ttcccatattattgaatgtataaatatttttgaatatcctcatcctttaaactagtttttg 179  Q
    ||||||||||||||||||  ||||||| ||||| |||||  | | |||| ||||||||||| ||||| ||||||||| |||| | |||| |||||    
T  43829715 ttgtagtttgtttctagtcccacattgttcaggattcccggactgttgagtgtataaatatgtttgagtatcctcattctttgagctagcttttg 43829621  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 30841610 - 30841557
Alignment:
Q  137 tataaatatttttgaatatcctcatcctttaaactagtttttgagatgagatcc 190  Q
    ||||||||| ||||| ||||||||||||||||||||  || || ||||||||||    
T  30841610 tataaatatgtttgagtatcctcatcctttaaactaacttgtgggatgagatcc 30841557  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 31260854 - 31260803
Alignment:
Q  137 tataaatatttttgaatatcctcatcctttaaactagtttttgagatgagat 188  Q
    ||||||||| |||||||||||||||| ||||||||| |||||  ||||||||    
T  31260854 tataaatatgtttgaatatcctcatcatttaaactaattttttggatgagat 31260803  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 3901035 - 3901089
Alignment:
Q  192 acaagtttcactctcctagtttgttggtcaacaacttttgatgcattattttatt 246  Q
    ||||||||| ||||| || ||||| |||||| ||| |||||||||||||||||||    
T  3901035 acaagtttcgctctcttaatttgtcggtcaagaacctttgatgcattattttatt 3901089  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 8745935 - 8745875
Alignment:
Q  130 ttgaatgtataaatatttttgaatatcctcatcctttaaactagtttttgagatgagatcc 190  Q
    |||| ||||||||||| || || |||||||||||||||| |||  ||||| ||||||||||    
T  8745935 ttgagtgtataaatatgttcgagtatcctcatcctttaagctaacttttgggatgagatcc 8745875  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 4316099 - 4316041
Alignment:
Q  108 cattgctcaggttcccatattattgaatgtataaatatttttgaatatcctcatccttt 166  Q
    ||||||||||||| ||| | ||||||  ||||||||||  |||||||||||||||||||    
T  4316099 cattgctcaggtttccagactattgagcgtataaatatgattgaatatcctcatccttt 4316041  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 54137320 - 54137254
Alignment:
Q  4 cttttaggatgaaattcaaactcatttaatttgctatgagagtcggattaaggattgcaatgtgaga 70  Q
    ||||| |||||| |||||| |||| ||||  || ||| |||||||| ||||||||||||||||||||    
T  54137320 cttttgggatgagattcaagctcaattaacatggtatcagagtcgggttaaggattgcaatgtgaga 54137254  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 36165570 - 36165466
Alignment:
Q  86 ttgtagtttgtttctagtttcacattgctcaggttcccatattattgaatgtataaatatttttgaatatcctcatcctttaaactagtttttgagatga 185  Q
    ||||| ||||||||||||  ||||||||| ||||||||   || |||| |||||||| || ||||| || ||||||| |||   |||| ||||| |||||    
T  36165570 ttgtaatttgtttctagtcccacattgctaaggttcccgggttgttgagtgtataaagatgtttgagtaccctcatcttttgtgctagattttgggatga 36165471  T
Q  186 gatcc 190  Q
    |||||    
T  36165470 gatcc 36165466  T

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Target: scaffold0557 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 4656 - 4693
Alignment:
Q  86 ttgtagtttgtttctagtttcacattgctcaggttccc 123  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  4656 ttgtagtttgtttctagtatcacattgctcagattccc 4693  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 46087 - 46144
Alignment:
Q  86 ttgtagtttgtttctagtttcacattgctcaggttcccatattattgaatgtataaat 143  Q
    |||||||||||||||||   ||||||||||||||| |||  || ||||||||||||||    
T  46087 ttgtagtttgtttctagccacacattgctcaggtttccaacttgttgaatgtataaat 46144  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 42643053 - 42643110
Alignment:
Q  133 aatgtataaatatttttgaatatcctcatcctttaaactagtttttgagatgagatcc 190  Q
    ||||||||||||| |||||||| | ||||| |||||  || |||||||||||||||||    
T  42643053 aatgtataaatatatttgaataccatcatcatttaagttaatttttgagatgagatcc 42643110  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 50196878 - 50196962
Alignment:
Q  106 cacattgctcaggttcccatattattgaatgtataaatatttttgaatatcctcatcctttaaactagtttttgagatgagatcc 190  Q
    ||||||||||| ||| || || | |||| ||||||||||| ||| |||| ||||||||||| | |||  ||||| ||||||||||    
T  50196878 cacattgctcatgtttccgtactgttgagtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatcc 50196962  T

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Target: scaffold1432 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 1007 - 971
Alignment:
Q  130 ttgaatgtataaatatttttgaatatcctcatccttt 166  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  1007 ttgaatgtataaatatgtttgagtatcctcatccttt 971  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 28432024 - 28431980
Alignment:
Q  135 tgtataaatatttttgaatatcctcatcctttaaactagtttttg 179  Q
    |||||||||||  |||| ||||||||||||||||||||| |||||    
T  28432024 tgtataaatatgcttgagtatcctcatcctttaaactagcttttg 28431980  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 33408213 - 33408153
Alignment:
Q  4 cttttaggatgaaattcaaactcatttaatttgctatgagagtcggattaaggattgcaat 64  Q
    ||||| |||||| ||||||||||||||||  || ||| |||||||| |||| |||||||||    
T  33408213 cttttgggatgagattcaaactcatttaacatggtatcagagtcggtttaatgattgcaat 33408153  T

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