View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_25 (Length: 395)
Name: NF14404_low_25
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 39080678 - 39081061
Alignment:
| Q |
1 |
atataggatgtacaaggaaaatgtgtgaaatatgtcattcataaataacaaacacaattttacctcatttaacgaccaatattatatgcagcataattta |
100 |
Q |
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| T |
39080678 |
atataggatgtacaaggaaaatgtg--aaatatgtcattcataaataacaaacacaattttacctcatttaacgaccaatgctatatgcagcataattga |
39080775 |
T |
|
| Q |
101 |
tgattgatatataagnnnnnnncaaagtgggagattctgatgcagtcatctccaaagggtactttcttatataaagacagaaaactca----gctcaaat |
196 |
Q |
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| T |
39080776 |
tgattgatatataagaaaaaaacaaagtgggagattctgatgctgtcatctccaaagggtactttcttatataaagacagaaaactcatatagctcaaat |
39080875 |
T |
|
| Q |
197 |
tttattgtgttgtaattctttttctttattactatattttctaattaataatgtcctcctaactcc---tgaaaaggaaaatttgttaaccaattaatca |
293 |
Q |
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| T |
39080876 |
tttattgtgttgtaattctttttctttattactatattttctaattaataatgtcctcctaactcctcctgaaaaggaaaatttgttaactaattaatca |
39080975 |
T |
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| Q |
294 |
gttatttatgtaatggtatactatcgagctccttaaccgtgtatgagttgacc-ttggaagaaagatgcctcatatatagggaatt |
378 |
Q |
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| T |
39080976 |
gttatttatgtaatggtatactatcgagctccttaaccgtgtatgagttgacctttggaagaaagatgcctcatatatagggaatt |
39081061 |
T |
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