View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_low_27 (Length: 373)

Name: NF14404_low_27
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_low_27
NF14404_low_27
[»] chr4 (14 HSPs)
chr4 (236-373)||(26332172-26332309)
chr4 (1-114)||(26332301-26332413)
chr4 (125-235)||(31699474-31699584)
chr4 (127-238)||(43480320-43480431)
chr4 (127-237)||(37306399-37306509)
chr4 (127-235)||(51475159-51475267)
chr4 (125-237)||(6540299-6540411)
chr4 (156-232)||(41095224-41095300)
chr4 (139-238)||(30111856-30111955)
chr4 (125-222)||(39810485-39810581)
chr4 (193-235)||(37315560-37315602)
chr4 (130-231)||(27654478-27654579)
chr4 (134-179)||(51823143-51823188)
chr4 (156-236)||(40925782-40925862)
[»] chr3 (13 HSPs)
chr3 (125-235)||(48543138-48543248)
chr3 (127-235)||(54186924-54187032)
chr3 (127-236)||(13639480-13639589)
chr3 (139-234)||(50320502-50320597)
chr3 (129-232)||(20909291-20909394)
chr3 (127-232)||(29235725-29235832)
chr3 (127-236)||(38602886-38602983)
chr3 (127-203)||(46893373-46893449)
chr3 (134-168)||(42780755-42780789)
chr3 (155-223)||(13639411-13639479)
chr3 (204-236)||(46559998-46560030)
chr3 (129-161)||(54140813-54140845)
chr3 (193-237)||(54187071-54187115)
[»] chr1 (10 HSPs)
chr1 (127-235)||(29068156-29068264)
chr1 (127-235)||(24886115-24886223)
chr1 (127-187)||(19078989-19079049)
chr1 (127-187)||(19126877-19126937)
chr1 (130-208)||(31602140-31602218)
chr1 (133-235)||(43275772-43275874)
chr1 (133-235)||(43161198-43161300)
chr1 (127-165)||(932057-932095)
chr1 (155-235)||(4853573-4853652)
chr1 (127-202)||(16173085-16173160)
[»] chr5 (13 HSPs)
chr5 (125-236)||(5990513-5990624)
chr5 (127-237)||(30892185-30892295)
chr5 (128-235)||(42958517-42958624)
chr5 (127-235)||(17190604-17190712)
chr5 (197-236)||(16122528-16122567)
chr5 (193-239)||(28611769-28611815)
chr5 (130-168)||(32153755-32153793)
chr5 (123-187)||(2976588-2976652)
chr5 (129-168)||(41020240-41020279)
chr5 (193-235)||(34818330-34818372)
chr5 (127-168)||(18237198-18237239)
chr5 (202-235)||(40699486-40699519)
chr5 (125-182)||(40699527-40699584)
[»] chr2 (11 HSPs)
chr2 (127-237)||(5139963-5140073)
chr2 (127-239)||(6951775-6951887)
chr2 (127-235)||(864095-864203)
chr2 (127-235)||(7709823-7709931)
chr2 (127-185)||(42635385-42635443)
chr2 (192-223)||(23494278-23494309)
chr2 (125-235)||(14096138-14096247)
chr2 (146-235)||(35714471-35714558)
chr2 (124-237)||(1110193-1110306)
chr2 (134-187)||(8503858-8503911)
chr2 (130-206)||(9132265-9132341)
[»] chr7 (13 HSPs)
chr7 (130-235)||(36738538-36738643)
chr7 (127-222)||(47822057-47822152)
chr7 (127-237)||(41873429-41873539)
chr7 (127-237)||(42815633-42815743)
chr7 (142-235)||(25980746-25980839)
chr7 (127-220)||(48745238-48745331)
chr7 (127-175)||(39237738-39237786)
chr7 (129-232)||(16082830-16082933)
chr7 (131-182)||(29310470-29310521)
chr7 (134-183)||(557424-557473)
chr7 (135-206)||(45508521-45508592)
chr7 (171-236)||(27888403-27888468)
chr7 (193-221)||(47821990-47822018)
[»] chr8 (7 HSPs)
chr8 (127-238)||(6580907-6581017)
chr8 (130-241)||(30085367-30085478)
chr8 (142-238)||(16896336-16896432)
chr8 (129-236)||(28700633-28700740)
chr8 (127-204)||(33440530-33440607)
chr8 (130-187)||(1311483-1311540)
chr8 (130-234)||(45057905-45058009)
[»] chr6 (3 HSPs)
chr6 (127-235)||(7447561-7447669)
chr6 (127-235)||(32439554-32439662)
chr6 (137-222)||(30479870-30479955)
[»] scaffold0922 (1 HSPs)
scaffold0922 (127-173)||(743-789)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 26332309 - 26332172
Alignment:
Q  236 tttgaaagatgactttcaatacatgcaagtatgatattgattgaaatataaattttccatgttaataaaatgagaaatgctattattagtgaaaaatagg 335  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||    
T  26332309 tttgaaagatgactttcaatacatgcaagtattatattgattgaaatataaattttccatgttaatgaaatgagaaatgctattattagtaaaaaaaagg 26332210  T
Q  336 ttagctaaagtttcacgacacatttgaaatgtttttat 373  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  26332209 ttagctaaagtttcacgacacatgtgaaatgtttttat 26332172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26332413 - 26332301
Alignment:
Q  1 aattacaagttcaaagaaatctaaagtgggatggttataggtgaagagttatgcttatgaattaaaacaacgattattttgaaatatctttttattggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  26332413 aattacaagttcaaagaaatctaaagtgggatggttataggtgaagagttatgcttatgaattaaaacaacgactattttg-aatatctttttattggtt 26332315  T
Q  101 gtagatttgaaaga 114  Q
    ||||||||||||||    
T  26332314 gtagatttgaaaga 26332301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 31699584 - 31699474
Alignment:
Q  125 atacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcc 224  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||     
T  31699584 atacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaataggagagtgagtgttagagagagtgctagaaagagagtgttct 31699485  T
Q  225 tagcatttctc 235  Q
    |||||||||||    
T  31699484 tagcatttctc 31699474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 43480320 - 43480431
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||| |||||||||||||||||| |||||||||||||||| |||| | ||||||||||| ||  || ||| |||||||||||||||||||||||||||    
T  43480320 acattgaaaatggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtgactgctagggagagtgctagaaagagagtgttccta 43480419  T
Q  227 gcatttctcttt 238  Q
    ||||||||||||    
T  43480420 gcatttctcttt 43480431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 37306509 - 37306399
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||| | ||||||  ||| ||  ||||||||||||||||||||||||||||||||||    
T  37306509 acattggaaatggatctcacataaagtggtgagacccacatgagtttcacccaatataagagtgagtgttagagagagtgctagaaagagagtgttccta 37306410  T
Q  227 gcatttctctt 237  Q
    |||||||||||    
T  37306409 gcatttctctt 37306399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 51475267 - 51475159
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||||||||||||||||||||||| |||||||| ||||||| |||| | |||||| |||  ||  ||||||||||||||||||||||||||||||||||    
T  51475267 acattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaataagagggtgagtgttagagagagtgctagaaagagagtgttccta 51475168  T
Q  227 gcatttctc 235  Q
    |||||||||    
T  51475167 gcatttctc 51475159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 6540299 - 6540411
Alignment:
Q  125 atacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcc 224  Q
    ||||||||||||||||||| ||| ||| |||||||| ||||||  |||| | ||||||||||| ||  |||||||||||||| |||||||||||||||||    
T  6540299 atacattggaaatggatcctacacaaagtggtgagatccacataagtttcacccaataggagaatgagtgttagagagagtgatagaaagagagtgttcc 6540398  T
Q  225 tagcatttctctt 237  Q
    || ||||||||||    
T  6540399 taccatttctctt 6540411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 41095224 - 41095300
Alignment:
Q  156 tgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcattt 232  Q
    |||| |||||||| ||||   ||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||    
T  41095224 tgagtcccacatgggtttcccccaataggagagtgggtgtttgagagagtggtagaaagagagtgttcctagcattt 41095300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 30111856 - 30111955
Alignment:
Q  139 gatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcatttctcttt 238  Q
    ||||||||||||| |||||||| ||||||| |||| | |||||| |||| ||  |||| |||||| || |||||||||| ||||| || |||||||||||    
T  30111856 gatcccacataaagtggtgagatccacatgagtttcacccaatatgagagtgagtgtttgagagaatgttagaaagagaatgttcatatcatttctcttt 30111955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 39810485 - 39810581
Alignment:
Q  125 atacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgtt 222  Q
    |||||||||||||  |||||||||||| ||||| ||| ||| ||  ||| | ||||||  ||| ||| ||||||||||||||||||||||||||||||    
T  39810485 atacattggaaatatatcccacataaa-tggtgggactcacgtgaattttacccaataaaagagtgggtgttagagagagtgctagaaagagagtgtt 39810581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 37315602 - 37315560
Alignment:
Q  193 tgttagagagagtgctagaaagagagtgttcctagcatttctc 235  Q
    ||||||||||||||||  |||||||||||| ||||||||||||    
T  37315602 tgttagagagagtgctcaaaagagagtgttgctagcatttctc 37315560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 27654579 - 27654478
Alignment:
Q  130 ttggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagca 229  Q
    |||||||||| | |||| |||| ||||| |||  ||||  |||| |||||||| |||| ||  |||||||||||||| |  ||||||||||| |||||||    
T  27654579 ttggaaatgggttccacttaaagtggtgggacatacattagttttatccaataagagaatgagtgttagagagagtgttgaaaagagagtgtccctagca 27654480  T
Q  230 tt 231  Q
    ||    
T  27654479 tt 27654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 51823143 - 51823188
Alignment:
Q  134 aaatggatcccacataaaatggtgagacccacatgtgtttaatcca 179  Q
    ||||||||| |||||||| |||||||||||||||| |||| |||||    
T  51823143 aaatggatcgcacataaagtggtgagacccacatgagtttcatcca 51823188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 40925862 - 40925782
Alignment:
Q  156 tgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcatttctct 236  Q
    |||||| ||||| ||||| ||||||||  ||| | | |||||||||||||  || |||||| ||| |||||||||||||||    
T  40925862 tgagactcacatttgttttatccaataaaagagtaggtgttagagagagtattaaaaagagcgtgctcctagcatttctct 40925782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 48543248 - 48543138
Alignment:
Q  125 atacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcc 224  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||||||||||||     
T  48543248 atacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaataggagagtgagtgttagagtgagtgctagaaagagagtgttct 48543149  T
Q  225 tagcatttctc 235  Q
    |||||||||||    
T  48543148 tagcatttctc 48543138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 54187032 - 54186924
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||| | ||||||||||| || ||||||||||||||| |||||||||||||||| ||    
T  54187032 acattagaaatggatcccacataaaatggtgagattcacatgagtttcacccaataggagagtgaatgttagagagagtgttagaaagagagtgttctta 54186933  T
Q  227 gcatttctc 235  Q
    |||||||||    
T  54186932 gcatttctc 54186924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 13639480 - 13639589
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||| | ||||||| | | |||  ||||||||||||||||||||||| |||||| |     
T  13639480 acattggaaatggatctcacataaagtggtgagacccacatgagtttcacccaatagaatagtgggcgttagagagagtgctagaaagagggtgttcttg 13639579  T
Q  227 gcatttctct 236  Q
    ||||||||||    
T  13639580 gcatttctct 13639589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 50320502 - 50320597
Alignment:
Q  139 gatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcatttct 234  Q
    ||||||||||||||||||||||| || ||| |||| || |||||| ||| ||  ||||||||||||||||||||||| ||||||||||||||||||    
T  50320502 gatcccacataaaatggtgagactcatatgagtttcattcaatagaagagtgagtgttagagagagtgctagaaagaaagtgttcctagcatttct 50320597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 20909394 - 20909291
Alignment:
Q  129 attggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagc 228  Q
    |||| |||||||||||||||||| |||||||||||||||| |||| | |||| |||||| |   |||||||||| ||| ||||||||||| ||||||| |    
T  20909394 attgaaaatggatcccacataaagtggtgagacccacatgagtttcacccaaaaggagagtaagtgttagagagtgtgttagaaagagagcgttcctaac 20909295  T
Q  229 attt 232  Q
    ||||    
T  20909294 attt 20909291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 29235725 - 29235832
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgt--tagagagagtgctagaaagagagtgttcc 224  Q
    ||||| ||||||||||| ||||||| ||||||||| || ||| |||| | ||||||||| | || ||||  ||||||| |||||||||||||||||||||    
T  29235725 acattagaaatggatccaacataaagtggtgagactcatatgagtttcacccaataggaaagtgaatgtgttagagagggtgctagaaagagagtgttcc 29235824  T
Q  225 tagcattt 232  Q
    || |||||    
T  29235825 taacattt 29235832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 38602886 - 38602983
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||| |||||||||||||||||| | ||||||| |||||| |||| | ||||||||||| ||            ||||||||||||| ||||||||||    
T  38602886 acattgaaaatggatcccacataaagtagtgagactcacatgagtttcacccaataggagagtg------------agtgctagaaagaaagtgttccta 38602973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 46893449 - 46893373
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagaga 203  Q
    ||||||||||||||||||||||||| |||||||||  | ||| |||| |||||| |||||  ||| ||||| |||||    
T  46893449 acattggaaatggatcccacataaagtggtgagacgaagatgagtttcatccaacaggagggtgggtgttaaagaga 46893373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 42780755 - 42780789
Alignment:
Q  134 aaatggatcccacataaaatggtgagacccacatg 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  42780755 aaatggatcccacataaagtggtgagacccacatg 42780789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 13639479 - 13639411
Alignment:
Q  155 gtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttc 223  Q
    |||| |||||||||  ||| ||||||||  ||| ||  |||||||||||||| ||||||||||||||||    
T  13639479 gtgatacccacatgaatttcatccaataaaagagtgactgttagagagagtgttagaaagagagtgttc 13639411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 46560030 - 46559998
Alignment:
Q  204 gtgctagaaagagagtgttcctagcatttctct 236  Q
    ||||||||||| |||||||||||||||||||||    
T  46560030 gtgctagaaagtgagtgttcctagcatttctct 46559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 54140813 - 54140845
Alignment:
Q  129 attggaaatggatcccacataaaatggtgagac 161  Q
    ||||||||||||||||||||||| |||||||||    
T  54140813 attggaaatggatcccacataaagtggtgagac 54140845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 54187071 - 54187115
Alignment:
Q  193 tgttagagagagtgctagaaagagagtgttcctagcatttctctt 237  Q
    |||||||||||||| |||||||||||||| | ||||| |||||||    
T  54187071 tgttagagagagtgttagaaagagagtgtccatagcacttctctt 54187115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 29068156 - 29068264
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  29068156 acattggaaattgatcccacataaaatggtgagacccacatgagtttcatccaataggagagtgagtgttagagagagtgctagaaagagagtgttccta 29068255  T
Q  227 gcatttctc 235  Q
    |||||||||    
T  29068256 gcatttctc 29068264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 24886115 - 24886223
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||| |||| |||||||||||||  ||||||||||||||| |||| | ||||||||||| ||  ||||||||||||||||||||||||||||||| ||    
T  24886115 acattgtaaatagatcccacataaagcggtgagacccacatgagtttcacccaataggagagtgagtgttagagagagtgctagaaagagagtgttctta 24886214  T
Q  227 gcatttctc 235  Q
    |||||||||    
T  24886215 gcatttctc 24886223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 19078989 - 19079049
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggaga 187  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||    
T  19078989 acattggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataggaga 19079049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 19126877 - 19126937
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggaga 187  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||    
T  19126877 acattggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataggaga 19126937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 31602140 - 31602218
Alignment:
Q  130 ttggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgct 208  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||| ||  ||||| | ||||||||    
T  31602140 ttggaaatggatcccacctaaagtggtgagacccacatgtgtttcatccaataagagagtgagtgttaaaaagagtgct 31602218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 43275874 - 43275772
Alignment:
Q  133 gaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcattt 232  Q
    ||||||||||||||||||||| ||||||||||||||  ||| |  |||||  | | ||  |||| ||||||||||||||||| ||||| |||||||||||    
T  43275874 gaaatggatcccacataaaatcgtgagacccacatgaatttcactcaataaaaaagtgagtgttggagagagtgctagaaagtgagtgctcctagcattt 43275775  T
Q  233 ctc 235  Q
    |||    
T  43275774 ctc 43275772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 43161198 - 43161300
Alignment:
Q  133 gaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcattt 232  Q
    |||||||||| ||| ||||| ||||| |||||| || |||| ||| ||||  ||| || ||||| |||||| || ||||||||||||||||||| |||||    
T  43161198 gaaatggatcacacgtaaaacggtgaaacccacgtgagtttcatcaaataaaagagtgaatgtttgagagaatgttagaaagagagtgttcctaacattt 43161297  T
Q  233 ctc 235  Q
    |||    
T  43161298 ctc 43161300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 932057 - 932095
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccac 165  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  932057 acattggaaatggatcccacataaagtggtgagacccac 932095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 4853573 - 4853652
Alignment:
Q  155 gtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcatttctc 235  Q
    |||||||||||||| |||| |||| |||| ||| ||| ||||||| |||| |||| |||||||||||| ||| ||||||||    
T  4853573 gtgagacccacatgagtttcatcccatagaagaatgg-tgttagaaagagcgctataaagagagtgtttctaacatttctc 4853652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 16173085 - 16173160
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagag 202  Q
    |||||||||||| |||||||||| |  ||||||| ||||||| |||| | ||||||||||| ||  ||||||||||    
T  16173085 acattggaaatgaatcccacatatagaggtgagatccacatgggtttcacccaataggagagtgagtgttagagag 16173160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 5990624 - 5990513
Alignment:
Q  125 atacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||  ||||||||||||||||| |||||||| ||||     
T  5990624 atacattggaaatggatcccacataaaatggtgagacccacatgtatttaatccaatatgagagtgagtgttagagagagtgctaaaaagagagcgttct 5990525  T
Q  225 tagcatttctct 236  Q
    ||||||||||||    
T  5990524 tagcatttctct 5990513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 30892185 - 30892295
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||| ||||||||||||||||||||||||||||| || ||| |||| | ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  30892185 acattagaaatggatcccacataaaatggtgagactcatatgagtttcacccaataggagagtgagtgttagagagagtgctagaaagagagtgttccta 30892284  T
Q  227 gcatttctctt 237  Q
    |||||||||||    
T  30892285 gcatttctctt 30892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 42958517 - 42958624
Alignment:
Q  128 cattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctag 227  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||| | | ||  |||||||| ||||||||||||||||||||||||||    
T  42958517 cattggaaatggatcccacataaagtggtgagacccgcatgagtttcatccaatagaaaagtgagtgttagagtgagtgctagaaagagagtgttcctag 42958616  T
Q  228 catttctc 235  Q
    ||||||||    
T  42958617 catttctc 42958624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 17190712 - 17190604
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||| ||||||||||||||||||| |||||||||||||||  |||| | | ||||||| | ||  ||||||||||||||||||||||||||||||| ||    
T  17190712 acattagaaatggatcccacataaagtggtgagacccacataagtttcacctaataggaaagtgagtgttagagagagtgctagaaagagagtgttcata 17190613  T
Q  227 gcatttctc 235  Q
    |||||||||    
T  17190612 gcatttctc 17190604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 16122528 - 16122567
Alignment:
Q  197 agagagagtgctagaaagagagtgttcctagcatttctct 236  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  16122528 agagtgagtgctagaaagagagtgttcctagcatttctct 16122567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 28611815 - 28611769
Alignment:
Q  193 tgttagagagagtgctagaaagagagtgttcctagcatttctctttg 239  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||||    
T  28611815 tgttagagagagtgctcaaaagagagtgttgctagcatttctctttg 28611769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 32153793 - 32153755
Alignment:
Q  130 ttggaaatggatcccacataaaatggtgagacccacatg 168  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  32153793 ttggaaatggatcccacataaagtggtgagacccacatg 32153755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 2976588 - 2976652
Alignment:
Q  123 ctatacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggaga 187  Q
    ||||||||||||||| ||||  | ||||||| || ||||||||||| |||| |||||||||||||    
T  2976588 ctatacattggaaattgatctaatataaaattgtaagacccacatgggttttatccaataggaga 2976652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 41020279 - 41020240
Alignment:
Q  129 attggaaatggatcccacataaaatggtgagacccacatg 168  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  41020279 attggaaatgaatcccacataaagtggtgagacccacatg 41020240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 34818330 - 34818372
Alignment:
Q  193 tgttagagagagtgctagaaagagagtgttcctagcatttctc 235  Q
    ||||||||||||||||  ||||||| |||||||||||||||||    
T  34818330 tgttagagagagtgctcaaaagagaatgttcctagcatttctc 34818372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 18237239 - 18237198
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatg 168  Q
    |||||| |||| ||||||||||||| ||||||||||||||||    
T  18237239 acattgaaaatagatcccacataaagtggtgagacccacatg 18237198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 40699519 - 40699486
Alignment:
Q  202 gagtgctagaaagagagtgttcctagcatttctc 235  Q
    ||||| ||||||||||||||||||||||||||||    
T  40699519 gagtgttagaaagagagtgttcctagcatttctc 40699486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 40699584 - 40699527
Alignment:
Q  125 atacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaata 182  Q
    |||| |||||||||||||||| ||||| | |||||||||||||| |||| | ||||||    
T  40699584 atactttggaaatggatcccaaataaagtagtgagacccacatgggtttcacccaata 40699527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 5140073 - 5139963
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||| |||||||||||||||||| |||||| |||| |||| |||| | ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  5140073 acattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcacccaataggagagtgagtgttagagagagtgctagaaagagagtgttccta 5139974  T
Q  227 gcatttctctt 237  Q
    |||||||||||    
T  5139973 gcatttctctt 5139963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 6951775 - 6951887
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||| |||||||||||||||||| |||||||||||||||| |||| |||||||||||   ||  ||||| |||||||| |||||||| ||||||  ||    
T  6951775 acattgaaaatggatcccacataaagtggtgagacccacatgagtttcatccaataggaaggtgagtgttaaagagagtgttagaaagatagtgttttta 6951874  T
Q  227 gcatttctctttg 239  Q
    |||||||||||||    
T  6951875 gcatttctctttg 6951887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 864203 - 864095
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||| |||||||||||||||||||  | |||| ||||| || |||| ||||||||| | | |   ||||||||||||||||||||||||||||||||||    
T  864203 acattagaaatggatcccacataaagcgatgagccccacttgggtttcatccaatagaaaaataagtgttagagagagtgctagaaagagagtgttccta 864104  T
Q  227 gcatttctc 235  Q
    | |||||||    
T  864103 gtatttctc 864095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 7709823 - 7709931
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||||||||| ||||||||||||| ||||||| |||||||| |||| | || |||||||| ||  ||||||||||| ||||| ||||||| |||| |||    
T  7709823 acattggaaatagatcccacataaagtggtgagtcccacatgagtttcaccctataggagagtgagtgttagagagattgctaaaaagagaatgtttcta 7709922  T
Q  227 gcatttctc 235  Q
     ||||||||    
T  7709923 acatttctc 7709931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 42635385 - 42635443
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaatagga 185  Q
    |||||| |||||||| ||||||||| || ||||||||||||| |||| |||||||||||    
T  42635385 acattgaaaatggattccacataaagtgatgagacccacatgagtttcatccaatagga 42635443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 23494309 - 23494278
Alignment:
Q  192 atgttagagagagtgctagaaagagagtgttc 223  Q
    ||||||||||||||||||||||||||||||||    
T  23494309 atgttagagagagtgctagaaagagagtgttc 23494278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 14096138 - 14096247
Alignment:
Q  125 atacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcc 224  Q
    |||| ||||||||||||||  |||||| |||||||||| ||||  |||| | | |||   ||| ||||||||||||||| ||||| ||||||||||| |     
T  14096138 atactttggaaatggatcct-cataaattggtgagacctacataggtttcaactaatgaaagagtggatgttagagagaatgctaaaaagagagtgtaca 14096236  T
Q  225 tagcatttctc 235  Q
    || ||||||||    
T  14096237 taccatttctc 14096247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 35714558 - 35714471
Alignment:
Q  146 cataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcatttctc 235  Q
    |||||| |||||||||| ||||| |||| |   ||||||||| || ||||| ||||||||| || ||||||  |||||||||||||||||    
T  35714558 cataaagtggtgagacctacatgggtttcactaaataggagagtgaatgttggagagagtgttaaaaagag--tgttcctagcatttctc 35714471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 1110306 - 1110193
Alignment:
Q  124 tatacattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttc 223  Q
    ||||| ||||||||||| |||||||||| ||||| |||  ||||   ||| |  |||||  ||| ||  ||||||||||| |||| |||||||||||||     
T  1110306 tatactttggaaatggaacccacataaagtggtgggacatacattgatttcactcaataaaagagtgagtgttagagagaatgctcgaaagagagtgttg 1110207  T
Q  224 ctagcatttctctt 237  Q
    |||||||| |||||    
T  1110206 ctagcattcctctt 1110193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 8503858 - 8503911
Alignment:
Q  134 aaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggaga 187  Q
    ||||| ||| |||||||| |||||||| ||||||| |||| |||||||||||||    
T  8503858 aaatgaatctcacataaagtggtgagatccacatgagtttcatccaataggaga 8503911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 9132341 - 9132265
Alignment:
Q  130 ttggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtg 206  Q
    |||||||| | | ||||||||||||||||||||||| || |||| | |||||| |||| ||  ||||||| ||||||    
T  9132341 ttggaaattggttccacataaaatggtgagacccacttgggtttcacccaataagagagtgagtgttagaaagagtg 9132265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 36738538 - 36738643
Alignment:
Q  130 ttggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagca 229  Q
    |||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||| ||  ||||||| ||||||||| ||||||||||||| || ||    
T  36738538 ttggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtgagtgttagaaagagtgctaaaaagagagtgttcttaaca 36738637  T
Q  230 tttctc 235  Q
    ||||||    
T  36738638 tttctc 36738643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 47822057 - 47822152
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgtt 222  Q
    ||||||||||||||||||||||||| |||||||| ||||||| |||| | ||||||| ||| ||  |||||||||||||||| |||||||||||||    
T  47822057 acattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaatagaagagtgagtgttagagagagtgcttgaaagagagtgtt 47822152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 41873539 - 41873429
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||| |||||||| |||||||||| || |||||| |||||| |||| | ||||||  | | ||  ||||||||||||||||||||||||||||||||||    
T  41873539 acattagaaatggaacccacataaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgttagagagagtgctagaaagagagtgttccta 41873440  T
Q  227 gcatttctctt 237  Q
    |||||||||||    
T  41873439 gcatttctctt 41873429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 42815633 - 42815743
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||| |||||||| || |||||| |||||||||||||||| |||| | | |||| |||  ||  ||||| |||||||| |||||||||||||||||||    
T  42815633 acattgaaaatggattccccataaagtggtgagacccacatgagtttcacctaataagagggtgagtgttaaagagagtgttagaaagagagtgttccta 42815732  T
Q  227 gcatttctctt 237  Q
    |||||||||||    
T  42815733 gcatttctctt 42815743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 25980839 - 25980746
Alignment:
Q  142 cccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcatttctc 235  Q
    |||||||||||||||||||| |||  |  ||| ||||||||| ||| ||  | |||||||||||| |||||| |||||||||||||||||||||    
T  25980839 cccacataaaatggtgagacacacgcgaatttcatccaatagaagagtgagttttagagagagtgttagaaatagagtgttcctagcatttctc 25980746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 48745331 - 48745238
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtg 220  Q
    |||||| |||||||||||||||||| || |||||||||||||  ||| | |||||| |||| || |||||||||||| || || ||||||||||    
T  48745331 acattgcaaatggatcccacataaattgatgagacccacatggatttgacccaataagagagtgaatgttagagagaatgttaaaaagagagtg 48745238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 39237738 - 39237786
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaa 175  Q
    ||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  39237738 acattggaaatggatcccatataaagtggtgagacccacatgagtttaa 39237786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 16082830 - 16082933
Alignment:
Q  129 attggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagc 228  Q
    ||||||| ||||| |||||||||  |||||||||||||||  ||| | | ||||| ||| || || ||||| ||||||||||| | ||| ||||||||||    
T  16082830 attggaagtggattccacataaagaggtgagacccacatgaatttcacctaatagcagagtgaatattagaaagagtgctagagaaagaatgttcctagc 16082929  T
Q  229 attt 232  Q
    ||||    
T  16082930 attt 16082933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 29310521 - 29310470
Alignment:
Q  131 tggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaata 182  Q
    ||||||||||||||||||||| |||||||||||||||| |||| | ||||||    
T  29310521 tggaaatggatcccacataaagtggtgagacccacatgagtttcacccaata 29310470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 557473 - 557424
Alignment:
Q  134 aaatggatcccacataaaatggtgagacccacatgtgtttaatccaatag 183  Q
    |||||||||||||||||| |||||||||||||||| |||| | |||||||    
T  557473 aaatggatcccacataaagtggtgagacccacatgagtttcacccaatag 557424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 45508592 - 45508521
Alignment:
Q  135 aatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtg 206  Q
    |||||||||||| |||| ||||||||||||| || |||| | ||||||| ||| ||  ||||||||||||||    
T  45508592 aatggatcccacgtaaagtggtgagacccacgtgggtttcacccaatagaagaatgagtgttagagagagtg 45508521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 27888403 - 27888468
Alignment:
Q  171 tttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcatttctct 236  Q
    ||||| |||||| |||| ||  ||||||||||||||||  |||||||||||| |||||||| ||||    
T  27888403 tttaaaccaataagagagtgagtgttagagagagtgctcaaaagagagtgttgctagcattcctct 27888468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 47822018 - 47821990
Alignment:
Q  193 tgttagagagagtgctagaaagagagtgt 221  Q
    |||||||||||||||||||||||||||||    
T  47822018 tgttagagagagtgctagaaagagagtgt 47821990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 6580907 - 6581017
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||| | ||||||| ||  ||  ||||||||||||||||||||||||||||||| ||    
T  6580907 acattggaaatg-atcccacataaagtggtgagacccacatgagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttctta 6581005  T
Q  227 gcatttctcttt 238  Q
     |||||||||||    
T  6581006 acatttctcttt 6581017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 30085478 - 30085367
Alignment:
Q  130 ttggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagca 229  Q
    |||||||||||||||||||||| |||||||| ||||||| |||| | |||||| ||   ||  | ||||||||| ||||||||| | |||||||||||||    
T  30085478 ttggaaatggatcccacataaagtggtgagatccacatgagtttcacccaataagatggtgagtattagagagaatgctagaaaaatagtgttcctagca 30085379  T
Q  230 tttctctttgaa 241  Q
    ||||||||||||    
T  30085378 tttctctttgaa 30085367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 16896336 - 16896432
Alignment:
Q  142 cccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagcatttctcttt 238  Q
    |||||||||| |||||||||||||||| |||| | | ||||| | | ||  ||||||||||||||||||||||||||||   |||||||||||||||    
T  16896336 cccacataaagtggtgagacccacatgagtttcaccaaatagaaaaatgagtgttagagagagtgctagaaagagagtgccgctagcatttctcttt 16896432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 28700633 - 28700740
Alignment:
Q  129 attggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagc 228  Q
    |||||||||| |||||||||||| ||||||||| |||||| |||| |  |||||| ||| ||  ||||| |||| ||| |||||||| ||||||| ||||    
T  28700633 attggaaatgaatcccacataaagtggtgagactcacatgagtttcactcaatagaagagtgagtgttaaagagtgtgatagaaagaaagtgttcatagc 28700732  T
Q  229 atttctct 236  Q
    ||||||||    
T  28700733 atttctct 28700740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 33440607 - 33440530
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagag 204  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| | | ||||||||| ||  ||||||| ||||    
T  33440607 acattggaaatggatcccacataaagtggtgagacccacatgagtttcacctaataggagagtgagtgttagaaagag 33440530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 1311540 - 1311483
Alignment:
Q  130 ttggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggaga 187  Q
    |||||||||||||||||||||||||||||||||| |||| |||| | |||||| ||||    
T  1311540 ttggaaatggatcccacataaaatggtgagacccgcatgggtttcacccaataagaga 1311483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 45058009 - 45057905
Alignment:
Q  130 ttggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttcctagca 229  Q
    |||||||||||||||||||||| ||  |||||||||||  |||| | ||||||||||| ||  | || ||||||||| ||||||| | || ||||| |||    
T  45058009 ttggaaatggatcccacataaagtgacgagacccacataagtttcacccaataggagagtgagttttggagagagtgttagaaagggggtattcctggca 45057910  T
Q  230 tttct 234  Q
    |||||    
T  45057909 tttct 45057905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 7447669 - 7447561
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    ||||| ||||||||||||||||||| |||||||||||||||| | || | ||||||||||  ||  ||||| ||||| ||||||||||||||||||||||    
T  7447669 acattagaaatggatcccacataaagtggtgagacccacatgagcttcacccaataggagggtgattgttatagagaatgctagaaagagagtgttccta 7447570  T
Q  227 gcatttctc 235  Q
     ||||||||    
T  7447569 acatttctc 7447561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 32439554 - 32439662
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgttccta 226  Q
    |||||||||||||||||||||||||  |||||| ||||| || |||| ||||||||| | | |   ||||||||||||||||||||||||||||||||||    
T  32439554 acattggaaatggatcccacataaagcggtgagccccacttgggtttcatccaatagaaaaataagtgttagagagagtgctagaaagagagtgttccta 32439653  T
Q  227 gcatttctc 235  Q
    | |||||||    
T  32439654 gtatttctc 32439662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 30479955 - 30479870
Alignment:
Q  137 tggatcccacataaaatggtgagacccacatgtgtttaatccaataggagattggatgttagagagagtgctagaaagagagtgtt 222  Q
    ||||||||||||||| |||| |||||||||| ||||| |  |||||||||| || |||||| ||||||| ||||||||| ||||||    
T  30479955 tggatcccacataaagtggtaagacccacatatgttttactcaataggagaatgaatgttaaagagagttctagaaagatagtgtt 30479870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 743 - 789
Alignment:
Q  127 acattggaaatggatcccacataaaatggtgagacccacatgtgttt 173  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||    
T  743 acattgaaaatggatcccacataaagtggtgagacccacatgagttt 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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