View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_3 (Length: 810)
Name: NF14404_low_3
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 20 - 771
Target Start/End: Original strand, 2339253 - 2340016
Alignment:
| Q |
20 |
tcaaacgcaacaacaggcacacctagctgcaaaacggggatctaattcctttcccaagaccccatcaatgagtggagttgcttctcctgatagtgtcttt |
119 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2339253 |
tcaaaggcaacaacaggcacacctagctgcaaaacggggatctaattcctttcccaagaccccatcaatgagtggagttgcttctcctgatagtgttttt |
2339352 |
T |
|
| Q |
120 |
actgacgtcctattcaatgcaaatagtccctcag------------ctttttctaagcaaggtcttcaaaatatgttcgaaagattctcaaaaatcgata |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
2339353 |
actgacgtcctattcaatgcaaatagtccctcagttggaacctcagctttttctaagcaaggtcttcaaaatatgtttgaaaggttctcaaaaatcgata |
2339452 |
T |
|
| Q |
208 |
tggtgacaacgaggtatactgcttacatattaaaacagcatctcaactcaatattgtttttcgtatcccatgtttatgatttccattgatttnnnnnnnn |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2339453 |
tggtgacaacgaggtatactgcttacatattaaaacagcatctcaactcaatattgtttttcgtatcccatgtttatgatttccattgattttttaaaag |
2339552 |
T |
|
| Q |
308 |
nngaaagtaaattcaagtattctatggcggtgatggaaggctttgactagcatgttaataagacaatgttgtatgggacagtttgggttgggaggtagaa |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2339553 |
aaaaaagtaaattcaagtattctatggcggtgatggaaggctttgactagcattttaataagacaatgttgtatgggacagtttgggttgggaggtagaa |
2339652 |
T |
|
| Q |
408 |
agccaacacaagaataaactcaatgtagtatggatgagagtgttgcattggatgactgtaaatattagacgaggggagacgaaataggattggagaatga |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2339653 |
agccaacacaagaataaactcaatgtagtatggatgagagtgttgcattggatgactgtaaatattagacgaggggagacgaaataggattggagaatga |
2339752 |
T |
|
| Q |
508 |
taacattagagagagttggggagcaccnnnnnnnnnnnnagaaaaaatgattgaatctcaactttgttggtttagttatgtttggaggagattcataggt |
607 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2339753 |
taacattagagagagttggggagcaccttttttatttttagaaaaaatgattgaatctcaactttgttggtttagttatgtgtggaggagattcataggt |
2339852 |
T |
|
| Q |
608 |
tgtatagtaggagaattgattatgaagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagatttatat |
707 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2339853 |
tgtatagtaggagaattgattatggagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagatttatat |
2339952 |
T |
|
| Q |
708 |
ttcgatggtttagttattgacgtgattgatccatctagccactcacctaatgggataatgcgtg |
771 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
2339953 |
ttcaatggtttagttattgacgtgatcgatccatctagccactcacctaatgggatactgcgtg |
2340016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 701
Target Start/End: Complemental strand, 12577021 - 12576969
Alignment:
| Q |
648 |
ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat |
701 |
Q |
| |
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||||||||||||||||||| |||||||||| | | | ||||||||||||||||| |
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| T |
12577021 |
ctagaggcagaggaagacctagaaaaactacaagat-aaactattaagaaagat |
12576969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 21 - 474
Target Start/End: Original strand, 7749369 - 7749831
Alignment:
| Q |
21 |
caaacgcaacaacaggcacacctagctgcaaaacggggatctaattcctttcccaagaccccatcaatgagtggagttgcttctcctgatagtgtcttta |
120 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||| |||||| || |
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| T |
7749369 |
caaaggcaacaacaggcacacctagctgcaaaacggagatctaattcccttcccaagacacctgcaatgagtggagttgcttctcctgctagtgttagta |
7749468 |
T |
|
| Q |
121 |
ctgacgtcctattcaatgcaaatagtccctcag------------ctttttctaagcaaggtcttcaaaatatgttcgaaagattctcaaaaatcgatat |
208 |
Q |
| |
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||| |||| |||||||||||||||||| |||| |||| || |||||||||||||| ||||||| || || ||||||||||| ||||| |
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| T |
7749469 |
ctggtgtcccattcaatgcaaatagtccgtcagttggaacctcggctttacctgagcaaggtcttcaacatatgtttgacaggttctcaaaaattgatat |
7749568 |
T |
|
| Q |
209 |
ggtgacaacgaggtatactgcttacatattaaaacagcatctcaactcaatattgtttttcgta-tcccatgtttatgat-ttccattgatttnnnnnnn |
306 |
Q |
| |
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|||||| ||||||||||||| |||||| |||||| |||||||||| |||||||||||||| ||||||||||||||| |||||||||| | |
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| T |
7749569 |
ggtgacgacgaggtatactgtttacat-ttaaaa-agcatctcaa-----tattgtttttcgtaatcccatgtttatgatcttccattgatcttttcaaa |
7749661 |
T |
|
| Q |
307 |
nnngaaagtaaattcaagtattctatggcggtgatggaaggcttt-gactagcatgttaataagacaatgttgtatgggacagtttgggttgggaggtag |
405 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||| ||| ||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||| |
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| T |
7749662 |
gaaaaaagtaaattcaagtattctattgttgtgatgaaaggtttttgactagcattttaatcagacagtgttgtatgggacggtttgggttgggaggtag |
7749761 |
T |
|
| Q |
406 |
aaagccaacacaagaataaactcaatgtagta-tggatgagagtgttgcattggatgactgtaaatatta |
474 |
Q |
| |
|
||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||| ||| || |||||||| |
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| T |
7749762 |
aaagccatcacatgaataaactcaacgtagtattggatgagaatgttgcattgggtgagtggaaatatta |
7749831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 584 - 768
Target Start/End: Original strand, 7749870 - 7750057
Alignment:
| Q |
584 |
tatgtttggaggagattcataggttgtatagtaggagaattgatta--tgaagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactatagg |
681 |
Q |
| |
|
||||| ||||||||| ||||||||| | |||||||||| ||||||| || | ||| ||||||||| ||||||||||||| |||||| ||||||||||| |
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| T |
7749870 |
tatgtgtggaggagactcataggttctgtagtaggagagttgattagatggtgggcaacctaatcgccagaggcagaggaataccaagcaaaactatagg |
7749969 |
T |
|
| Q |
682 |
ctaaaactattaagaaagatttatatttcgatggtttagttattgacgtgattgatccatctagc-cactcacctaatgggataatgc |
768 |
Q |
| |
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| ||||||||||||||||||||| || || |||||||| ||| || |||||||||||| |||| ||||||||||| |||||||| |
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| T |
7749970 |
caaaaactattaagaaagatttagatgtcagtggtttagctatagatatgattgatccatatagctgactcacctaataagataatgc |
7750057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 44915585 - 44915680
Alignment:
| Q |
21 |
caaacgcaacaacaggcacacctagctgcaaaacgggga-tctaattcctttcccaagaccccatcaatgagtggagttgcttctcctgatagtgt |
115 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| || | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44915585 |
caaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaagaccccaacaatgagtggagttgcttctcctgatagtgt |
44915680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 643 - 701
Target Start/End: Original strand, 4011199 - 4011256
Alignment:
| Q |
643 |
aatcgctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat |
701 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||| |
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|
| T |
4011199 |
aatcgctagagacagaggaagacctagaaaaactataag-agaaactattaagaaagat |
4011256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 676
Target Start/End: Complemental strand, 29229643 - 29229614
Alignment:
| Q |
647 |
gctagaggcagaggaagaccaagaaaaact |
676 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
29229643 |
gctagaggcagaggaagaccaagaaaaact |
29229614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 701
Target Start/End: Original strand, 47147494 - 47147546
Alignment:
| Q |
648 |
ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat |
701 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | ||||||||||||||||| |
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|
| T |
47147494 |
ctagaggcagaggaagacctagaaaaactata-gaagaaactattaagaaagat |
47147546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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