View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_31 (Length: 344)
Name: NF14404_low_31
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 50370013 - 50369697
Alignment:
| Q |
18 |
agagattccaccctttctatatattgacatacaattaaacaaatgccaacacacactgcatcagcatcaccaacactcaactccctcaatccttttccct |
117 |
Q |
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| T |
50370013 |
agagattccaccctttctatatattgacatacaattaaacaaatgccaacacacactgcatcagcatcaccaacactcaactccctcaatccttttccct |
50369914 |
T |
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| Q |
118 |
ttttaaaaacttgatcctatccatggaggattctcagtttgacgtgattattgtcggagccggcgtcatgggaagttccaccgcctaccaagcagccaaa |
217 |
Q |
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| T |
50369913 |
tgttaaaaacttgatcctatccatggaggattctcagtttgacgtgattattgtcggagccggcgtcatgggaagttccaccgcctaccaagcagccaaa |
50369814 |
T |
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| Q |
218 |
aggggtctcaaaacactcttgcttgaacaatttgactttctccaccaccgtggctcttcccacggtgaatcccgcacaattcgtgctacctatattcaaa |
317 |
Q |
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| T |
50369813 |
aggggtctcaaaacactcttgcttgaacaatttgactttctccaccaccgtggctcttcccacggtgaatcccgcacaattcgtgctacctatattcaaa |
50369714 |
T |
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| Q |
318 |
accattactaccctatg |
334 |
Q |
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| T |
50369713 |
accattactaccctatg |
50369697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 50380033 - 50379897
Alignment:
| Q |
164 |
attattgtcggagccggcgtcatgggaagttccaccgcctaccaagcagccaaaaggggtctcaaaacactcttgcttgaacaatttgactttctccacc |
263 |
Q |
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| T |
50380033 |
attattgtcggcgccggcgtcatgggaagctccaccgcctactacgctgccaaacgaggcctcaaaaccctggttctcgaacaattcgattttcttcacc |
50379934 |
T |
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| Q |
264 |
accgtggctcttcccacggtgaatcccgcacaattcg |
300 |
Q |
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| T |
50379933 |
accgtggttcctcccacggtgaatcccgcacaattcg |
50379897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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