View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_33 (Length: 337)
Name: NF14404_low_33
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 30769180 - 30769476
Alignment:
| Q |
18 |
gtaattagcaatttagcactctatattggcaaataaagcagacattataagtttccaatgttattttgttccttttgcattgctttaaggttgtgtatat |
117 |
Q |
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| T |
30769180 |
gtaattagcaatttagcactctatattggcaaataaagcagacattataagtttccaatgttattttgttccttttgcattgctttaaggttgtgtatat |
30769279 |
T |
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| Q |
118 |
tgataggacttatgttgaacacgttagttgttcgacttatgttctaacacattagttttttgagtgttgaaacactcttatcaaatcaaatttacttaag |
217 |
Q |
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| T |
30769280 |
tgataggacttatgttgaacacattagttgttcgacttatgttctaatacattagttttttgagtgttgaaacactcttatcaaatcaaatttacttaag |
30769379 |
T |
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| Q |
218 |
tgagagcatagtttggttatttgtacgatgagtaaattcactagtcttgtaatttcttactttggtttgctgaaatgaatgcatatataggatgcaa |
314 |
Q |
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| T |
30769380 |
tgagagcatagtttggttatttgtacgatgagtaaattcactagtcttgtaatttcttactttggtttgctgaaatgaatgcatatataggatgcaa |
30769476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 30773056 - 30773113
Alignment:
| Q |
43 |
ttggcaaataaagcagacattataagtttccaatgttattttgttccttttgcattgc |
100 |
Q |
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| T |
30773056 |
ttggcaaataaagcaaacttgattagtttgcagtgctattttgttccttttgcattgc |
30773113 |
T |
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