View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_low_36 (Length: 318)

Name: NF14404_low_36
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_low_36
NF14404_low_36
[»] chr5 (14 HSPs)
chr5 (40-310)||(32837235-32837499)
chr5 (229-303)||(42061645-42061719)
chr5 (229-310)||(37214918-37214999)
chr5 (229-308)||(28788167-28788246)
chr5 (240-310)||(21336499-21336569)
chr5 (240-305)||(21827798-21827863)
chr5 (240-303)||(22937833-22937896)
chr5 (240-297)||(21333483-21333540)
chr5 (229-310)||(28441948-28442029)
chr5 (229-310)||(43490945-43491026)
chr5 (242-296)||(40916667-40916721)
chr5 (245-310)||(14376638-14376702)
chr5 (242-303)||(31863031-31863092)
chr5 (232-305)||(39191488-39191561)
[»] chr6 (6 HSPs)
chr6 (101-310)||(2371565-2371764)
chr6 (229-302)||(9953196-9953269)
chr6 (229-310)||(34501566-34501647)
chr6 (240-310)||(5738967-5739037)
chr6 (229-303)||(23379580-23379654)
chr6 (229-303)||(23388919-23388993)
[»] chr4 (18 HSPs)
chr4 (229-310)||(5721738-5721819)
chr4 (229-310)||(37104028-37104109)
chr4 (229-303)||(18910763-18910837)
chr4 (229-310)||(15431316-15431397)
chr4 (229-310)||(15437930-15438011)
chr4 (233-305)||(3798567-3798639)
chr4 (229-310)||(9717103-9717184)
chr4 (240-310)||(19861065-19861135)
chr4 (229-310)||(5680621-5680702)
chr4 (240-301)||(33410740-33410801)
chr4 (240-305)||(12237511-12237576)
chr4 (240-296)||(27013396-27013452)
chr4 (240-303)||(40617590-40617653)
chr4 (240-310)||(19865421-19865491)
chr4 (241-310)||(53093873-53093941)
chr4 (242-302)||(5669788-5669848)
chr4 (240-302)||(49269895-49269956)
chr4 (243-294)||(48014721-48014772)
[»] chr3 (18 HSPs)
chr3 (229-310)||(18645508-18645589)
chr3 (229-308)||(53815126-53815205)
chr3 (229-310)||(16185423-16185504)
chr3 (229-305)||(35411834-35411910)
chr3 (229-303)||(23299320-23299394)
chr3 (229-310)||(17532484-17532565)
chr3 (240-303)||(6445439-6445502)
chr3 (229-303)||(6922049-6922123)
chr3 (229-310)||(10884170-10884251)
chr3 (240-303)||(52198464-52198527)
chr3 (240-303)||(55032715-55032778)
chr3 (229-302)||(538175-538248)
chr3 (242-310)||(54736631-54736699)
chr3 (240-303)||(28265160-28265223)
chr3 (229-308)||(54460531-54460609)
chr3 (229-296)||(8462325-8462392)
chr3 (242-293)||(9392057-9392108)
chr3 (229-302)||(10107394-10107467)
[»] chr1 (6 HSPs)
chr1 (229-310)||(2793451-2793532)
chr1 (229-310)||(1951112-1951193)
chr1 (229-310)||(42021875-42021956)
chr1 (229-310)||(49499335-49499416)
chr1 (229-310)||(29644075-29644156)
chr1 (240-310)||(34733042-34733111)
[»] chr2 (12 HSPs)
chr2 (229-308)||(10600117-10600196)
chr2 (227-310)||(29439727-29439810)
chr2 (229-310)||(26358824-26358905)
chr2 (229-310)||(38006053-38006134)
chr2 (229-305)||(25821684-25821760)
chr2 (231-310)||(25873355-25873434)
chr2 (229-310)||(25869987-25870068)
chr2 (229-310)||(36809202-36809283)
chr2 (242-306)||(30275472-30275535)
chr2 (240-303)||(25139818-25139881)
chr2 (241-293)||(16788557-16788609)
chr2 (244-294)||(30925919-30925969)
[»] chr7 (7 HSPs)
chr7 (229-303)||(8276171-8276245)
chr7 (229-308)||(45287904-45287983)
chr7 (229-308)||(45291240-45291319)
chr7 (229-310)||(10431538-10431619)
chr7 (229-303)||(26556669-26556743)
chr7 (229-310)||(2442045-2442125)
chr7 (229-310)||(4542226-4542306)
[»] scaffold0270 (3 HSPs)
scaffold0270 (229-304)||(826-901)
scaffold0270 (229-304)||(4186-4261)
scaffold0270 (229-304)||(11316-11391)
[»] chr8 (13 HSPs)
chr8 (234-305)||(43682569-43682640)
chr8 (229-310)||(45156685-45156766)
chr8 (240-303)||(17895295-17895358)
chr8 (233-303)||(25595455-25595525)
chr8 (233-302)||(33878009-33878078)
chr8 (241-305)||(20520109-20520173)
chr8 (228-303)||(25228171-25228246)
chr8 (240-310)||(5540773-5540843)
chr8 (233-303)||(25592270-25592340)
chr8 (240-302)||(10663171-10663233)
chr8 (233-303)||(18722081-18722151)
chr8 (240-296)||(23612745-23612801)
chr8 (258-305)||(14421021-14421068)
[»] scaffold0080 (1 HSPs)
scaffold0080 (229-310)||(26397-26478)
[»] scaffold0015 (1 HSPs)
scaffold0015 (229-310)||(197383-197464)
[»] scaffold0005 (1 HSPs)
scaffold0005 (229-310)||(291115-291196)
[»] scaffold0035 (1 HSPs)
scaffold0035 (240-303)||(61756-61819)
[»] scaffold0381 (1 HSPs)
scaffold0381 (240-296)||(6331-6387)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 32837499 - 32837235
Alignment:
Q  40 aggttcaggtaacctagctagtttcttt----tctttcacgggtcaacaccaaaatgattgggtcaaagcccatttgtttttatttttctattt-ccaat 134  Q
    ||||||||||||||||||||||||||||    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  32837499 aggttcaggtaacctagctagtttctttcttttctttcacgagtcaacaccaaaatggttgggtcaaagcccatttgtttttatttttctattttccaat 32837400  T
Q  135 tgccaagcatatgccgtaagtgtggctatatgatggctatatgataattaagccatgataattttttagcttcactcttaagcacttcaaagtatgccac 234  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  32837399 tgccaagcatatgccgtaagtgtggctatatgat-----------aattaagccatgataaatttttagcttcactcttaagcacttcaaagtatgtcac 32837311  T
Q  235 atgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  32837310 atgtccctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaaactcatcctatgct 32837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 42061719 - 42061645
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42061719 tgccacatgtccctaaaatcatgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatc 42061645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 37214999 - 37214918
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  37214999 tgccacatgttcctaaaatcgtgtcacgaaatagccatcatgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 37214918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 28788167 - 28788246
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 308  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  28788167 tgccacatgtttctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 28788246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 21336499 - 21336569
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  21336499 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 21336569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 21827798 - 21827863
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21827798 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 21827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 22937833 - 22937896
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  22937833 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacctcatc 22937896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 21333483 - 21333540
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaac 297  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21333483 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaac 21333540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 28441948 - 28442029
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||| || ||||||||||||| ||||    
T  28441948 tgccacatgtccttaaaatcgtgtcacgaaatagccatcatgacacgttttagccaatgttgagtgaacctcatcctgtgct 28442029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 43491026 - 43490945
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||| | ||||||||||||||| ||||    
T  43491026 tgccacatgtccctaaaatcgtgttacgaaatagacatcgtgatacgttttaaccaatgccaaatgaacctcatcctgtgct 43490945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 40916667 - 40916721
Alignment:
Q  242 taaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaa 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40916667 taaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 40916721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 14376638 - 14376702
Alignment:
Q  245 aatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  14376638 aatcgtgtcacgaaatagccatcgtgacacgttttaa-caatgtcgaatgaacctcatcctgtgct 14376702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 31863092 - 31863031
Alignment:
Q  242 taaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||    
T  31863092 taaaatcgtgtcacgaaatagccatcgtgacacgatttaaacaatgtcgaatgaacttcatc 31863031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 39191561 - 39191488
Alignment:
Q  232 cacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    ||||||| | ||||||||||| |||||||||  || ||||||||||||||||||| |||||| |||||||||||    
T  39191561 cacatgttcttaaaatcgtgttacgaaatagacattgtgacacgttttaaccaatatcgaataaacctcatcct 39191488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 101 - 310
Target Start/End: Complemental strand, 2371764 - 2371565
Alignment:
Q  101 aaagcccatttgtttttatttttctattt-ccaattgccaagcatatgccgtaagtgtggctatatgatggctatatgataattaagccatgataatttt 199  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||           ||||||||||||||||  ||    
T  2371764 aaagcccatttgtttttattttactattttccaattgccaagcatataccgtaagtgtggctatatgat-----------aattaagccatgataaaatt 2371676  T
Q  200 ttagcttcactcttaagcacttcaaagtatgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacct 299  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2371675 tcagcttcactcttaagcacttcaaagtatgccacatgtccctaaaatcgtgtcacgaaatagccatcatgacacgttttaaccaatgtcgaatgaacct 2371576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 9953269 - 9953196
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 302  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9953269 tgccacatgttcctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 9953196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 34501647 - 34501566
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||    
T  34501647 tgccacatgtccctaaaattgtgtcatgaaatagccatcgtgacacgttttagctaatgtcgaatgaacctcatcctatgct 34501566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 5738967 - 5739037
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  5738967 cctaaaatcgtgtcacgaaatagccatcgtgacgcgttttaaccaatgtcgaatgaacctcatcctttgct 5739037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 23379580 - 23379654
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  23379580 tgccacatgttcctagaatcgtgtcacgaaatagctatcgtgacacgttttaatcaatgtcgagtgaacctcatc 23379654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 23388919 - 23388993
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  23388919 tgccacatgttcctagaatcgtgtcacgaaatagctatcgtgacacgttttaatcaatgtcgagtgaacctcatc 23388993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 5721738 - 5721819
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  5721738 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 5721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 37104028 - 37104109
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  37104028 tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 37104109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 18910837 - 18910763
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  18910837 tgccacatgtccctaaaatcgtgtcatgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 18910763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 15431397 - 15431316
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||    
T  15431397 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgct 15431316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 15438011 - 15437930
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||    
T  15438011 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgct 15437930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 3798567 - 3798639
Alignment:
Q  233 acatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3798567 acatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 3798639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 9717184 - 9717103
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||| ||||    
T  9717184 tgccacatgtccctaaaatcgtgtcacgaaagagccatcgtgacacgatttaaccaatgtcgaacgaacctcatcctgtgct 9717103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 19861065 - 19861135
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  19861065 cctaaaatcgtgtcacgaaatagccatcttgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 19861135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 5680702 - 5680621
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| ||||||||||||||| |||||||| |  ||||||||||||||||||||||||||||||||||| |||||||    
T  5680702 tgccacatgttcctaaaatcgtgtcaagaaatagcaaaagtgacacgttttaaccaatgtcgaatgaacctcattctatgct 5680621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 33410740 - 33410801
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctca 301  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33410740 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctca 33410801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 12237576 - 12237511
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  12237576 cctaaaatcgtgtcacgaaatagccatcgtgacatattttaaccaatgtcgaatgaacctcatcct 12237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 27013452 - 27013396
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaa 296  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27013452 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 27013396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 40617590 - 40617653
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  40617590 cctaaaatcgtgtcacgaaatagccatcgtgactcgttttaatcaatgtcgaatgaacctcatc 40617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 19865421 - 19865491
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||||| ||| |  |||||||||||||||||||||||||||||||||| ||||    
T  19865421 cctaaaatcgtgtcacgaaatagccatcttagcacgttttaaccaatgtcgaatgaacctcatcctgtgct 19865491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 53093941 - 53093873
Alignment:
Q  241 ctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||    
T  53093941 ctaaaatcgtgtcacgaaatagccatcgtgacacgttct-accaatgtcgaatgaacctcatcctgtgct 53093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 5669848 - 5669788
Alignment:
Q  242 taaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 302  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  5669848 taaaatcgtgtcacgaaatagccaccgtgacacgttttaaccaatgtcgaataaacctcat 5669788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 49269956 - 49269895
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 302  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  49269956 cctaaaatcgtgtcacgaaatagc-attgtgacacgttttaaccaatgtcgaatgaatctcat 49269895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 48014721 - 48014772
Alignment:
Q  243 aaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatg 294  Q
    ||||| ||||||||||||||| ||| ||||||||||| | ||||||||||||    
T  48014721 aaaattgtgtcacgaaatagccatcatgacacgttttcatcaatgtcgaatg 48014772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 18645508 - 18645589
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  18645508 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 18645589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 53815205 - 53815126
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 308  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  53815205 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctatg 53815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 16185423 - 16185504
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  16185423 tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgct 16185504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 35411910 - 35411834
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  35411910 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcct 35411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 23299320 - 23299394
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  23299320 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacctcatc 23299394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 17532484 - 17532565
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||| ||||    
T  17532484 tgccacatgttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatatcgaatgaacctcatcctgtgct 17532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 6445439 - 6445502
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6445439 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 6445502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 6922123 - 6922049
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  6922123 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttcaccaatgttgaatgaacctcatc 6922049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 10884251 - 10884170
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||| ||||| ||||    
T  10884251 tgccacatgtccctaaaatcgtgtcacgaaatggccatcatgacacgttttaatcaatgtcgaatgaacctaatcctgtgct 10884170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 52198527 - 52198464
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  52198527 cctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatc 52198464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 55032715 - 55032778
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  55032715 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 55032778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 538248 - 538175
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 302  Q
    ||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||    
T  538248 tgccatatgtccctaaaatcgtgtcacgaaataaccatcgtaacacgttttaaccaatgtcgaatgaacttcat 538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 54736631 - 54736699
Alignment:
Q  242 taaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||    
T  54736631 taaaatcgtgtcacgaaatagacatcgtgacacgttttaaccaataccgaatgaacctcatcctatgct 54736699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 28265223 - 28265160
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  28265223 cctaaaatcgtgtcacgaaatagccaccgtgacacgttttaaccaatgtcgaatgaacttcatc 28265160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 54460609 - 54460531
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 308  Q
    |||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||    
T  54460609 tgccacatgttcttaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatcttgaatgaa-ctcatcctatg 54460531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 8462325 - 8462392
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaa 296  Q
    |||||| ||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  8462325 tgccacgtgtccttaaaatcgtgtcacgaaatagccatcgtgatacgttttaatcaatgtcgaatgaa 8462392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 9392108 - 9392057
Alignment:
Q  242 taaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaat 293  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  9392108 taaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgaat 9392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 10107394 - 10107467
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 302  Q
    ||||| ||||||||||||||||||||||||||| | ||||| || |||||||||||||||| ||| ||| ||||    
T  10107394 tgccatatgtccctaaaatcgtgtcacgaaataaccatcgtaacgcgttttaaccaatgtcaaattaacttcat 10107467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 2793532 - 2793451
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2793532 tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 2793451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 1951112 - 1951193
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  1951112 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccactgtcgaatgaacctcatcctatgct 1951193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 42021956 - 42021875
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  42021956 tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtaacacgttttaaccaatgtcgaatgaacctcatccgatgct 42021875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 49499335 - 49499416
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  49499335 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcatatgct 49499416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 29644075 - 29644156
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||| ||||    
T  29644075 tgccacatgtccctaaaatcatgtcacgaaatagccatcgtaacacgttttagccaatgtcgaatgaatctcatcctgtgct 29644156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 34733042 - 34733111
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||    
T  34733042 cctaaaatcatgtcacgaaatagccatcgtgacacatttt-accaatgtcgaatgaacctcatcctgtgct 34733111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 10600196 - 10600117
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 308  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10600196 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 10600117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 29439810 - 29439727
Alignment:
Q  227 tatgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  29439810 tatgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatatcgaatgaacttcatcctgtgct 29439727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 26358905 - 26358824
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  26358905 tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgatttaaccaatgccgaatgaacctcatcctgtgct 26358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 38006053 - 38006134
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  38006053 tgccacatgttcctgaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 38006134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 25821684 - 25821760
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  25821684 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcct 25821760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 25873434 - 25873355
Alignment:
Q  231 ccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  25873434 ccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacggtttaaccaatgtcgaatgaacctcatcctgtgct 25873355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 25870068 - 25869987
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  25870068 tgccacatgttcctaaaatcgtatcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacttcatcctgtgct 25869987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 36809202 - 36809283
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||    
T  36809202 tgccaaatgttcctaaaatcgtgtcacaaaatagccatcgtgacacgttttaaccaatgtcgaatgaatctcatcctgtgct 36809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 30275472 - 30275535
Alignment:
Q  242 taaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatccta 306  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  30275472 taaaatcgtgtcacgaaataaccatcgtgacacgttttaaccaatgtcgaatgaa-ctcatccta 30275535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 25139818 - 25139881
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||||    
T  25139818 cctaaaatcgtgtcacgaaatagccattgtgacacgttttaactaatgtctaatgaacctcatc 25139881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 16788609 - 16788557
Alignment:
Q  241 ctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaat 293  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  16788609 ctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatatcgaat 16788557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 30925969 - 30925919
Alignment:
Q  244 aaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatg 294  Q
    ||||||||||||||| |||| |||||||||||||||   ||||||||||||    
T  30925969 aaatcgtgtcacgaattagccatcgtgacacgttttgctcaatgtcgaatg 30925919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 8276245 - 8276171
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8276245 tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 8276171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 45287904 - 45287983
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 308  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  45287904 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcttatg 45287983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 45291240 - 45291319
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 308  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  45291240 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcattctatg 45291319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 10431619 - 10431538
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  10431619 tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgct 10431538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 26556743 - 26556669
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  26556743 tgccacatgtccctaaaatcgtgtcatgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcatc 26556669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 2442045 - 2442125
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||| |||||||||||||    
T  2442045 tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgatacgttttagccaatgtcgagtgaa-ctcatcctatgct 2442125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 4542306 - 4542226
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| |||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||| |||||||||||||    
T  4542306 tgccacatgttcctaaaattgtgtcacgaaatatccatcgtgacaagttttaaccaatgtcgaatgaa-ctcatcctatgct 4542226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 826 - 901
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcc 304  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  826 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 4186 - 4261
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcc 304  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  4186 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 4261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 11316 - 11391
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcc 304  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  11316 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 11391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 43682569 - 43682640
Alignment:
Q  234 catgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  43682569 catgtccctaaaatcgtgtcacgaaatagccgtcgtgacacgttttaaccaatgtcgaatgaacctcatcct 43682640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 45156685 - 45156766
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||| |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||    
T  45156685 tgccacatgttcctaaaatcgtgtcacgaaatagccattgtgacacgttttaatcaatgtcgaatgaacctcatcctgtgct 45156766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 17895295 - 17895358
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17895295 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 17895358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 25595455 - 25595525
Alignment:
Q  233 acatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  25595455 acatgttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 25595525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 33878009 - 33878078
Alignment:
Q  233 acatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 302  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  33878009 acatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcat 33878078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 20520173 - 20520109
Alignment:
Q  241 ctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  20520173 ctaaaatcgtgtcacgaaatagccattgtgacacgttttaaccaatgtcgaatgaacctcatcct 20520109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 25228246 - 25228171
Alignment:
Q  228 atgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||| || |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  25228246 atgccatatatccctaaaatcgtgtcacgaaataaccatcgtaacacgttttaaccaatgtcgaatgaacctcatc 25228171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 5540773 - 5540843
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  5540773 cctaaaatcatgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 5540843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 25592270 - 25592340
Alignment:
Q  233 acatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||| |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  25592270 acatgttcctaaaatcgtgtcacgaaatagtcatcgtaacacgttttaaccaatgtcgaatgaacctcatc 25592340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 10663233 - 10663171
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 302  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  10663233 cctaaaatcgtgtcacgaaatatccatcgtgacacgttttaaccaatgtcgattgaacctcat 10663171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 18722081 - 18722151
Alignment:
Q  233 acatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||    
T  18722081 acatgttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccgatatcgaatgaacctcatc 18722151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 23612801 - 23612745
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaa 296  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  23612801 cctaaaatcgtgtcacgaaatagccattgtgacacgttttaaacaatgtcgaatgaa 23612745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 14421068 - 14421021
Alignment:
Q  258 aatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 305  Q
    ||||||||||||| ||||||||| ||||||| || |||||||||||||    
T  14421068 aatagctatcgtgtcacgttttagccaatgttgagtgaacctcatcct 14421021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 26478 - 26397
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  26478 tgccccatgtccctaaaaccgtgttacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 26397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 197464 - 197383
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||    
T  197464 tgccacatgtccctaaaatcgtgtcatgaaatagccatcgtgacacattttaatcaatgtcgaatgaacctcatcctgtgct 197383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 291196 - 291115
Alignment:
Q  229 tgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 310  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  291196 tgccacatgtccctaaaatcgtgttacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaaccttatcctgtgct 291115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 61819 - 61756
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcatc 303  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  61819 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 61756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 6331 - 6387
Alignment:
Q  240 cctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaa 296  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6331 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 6387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University