View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_40 (Length: 303)
Name: NF14404_low_40
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 6 - 295
Target Start/End: Complemental strand, 45392755 - 45392466
Alignment:
| Q |
6 |
aacttcgtgaatgcttgtgatttgatttgttaactcaactcataatgttatgattttacatatcaagcattattaaagatttcctaatatataaaatgga |
105 |
Q |
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| T |
45392755 |
aacttcgtgaatgcttgtgatttgatttgttaactcaactcataatgttatgattttacatatcaagcattattaaagatttcctattatataaaatgga |
45392656 |
T |
|
| Q |
106 |
taacaatctagcatatagnnnnnnnncagattaaatttccgttagcctctttgtattagaggttttgttagtaatggtatgatacatattgatcttagtt |
205 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45392655 |
taacaatctagcatatagttttttttcagattaaatttctgttagcctctttgtattagaggttttgttagtaatggtatgatacatattgatcttagtt |
45392556 |
T |
|
| Q |
206 |
gtctgtctgtcgcacattaattgttgatgtttttgtttcttgcacgaactgcattggcgatacttgagatgtaataatttcttttttgct |
295 |
Q |
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| T |
45392555 |
gtctgtctgtcgcacattaattgttgatgtttttgtttcttgcacgaactgcattggcgatacttgagatgtaataatttcttttttgct |
45392466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 52739455 - 52739347
Alignment:
| Q |
15 |
aatgcttgtgatttgatttgttaactcaactcataatgttatgattttacatatcaagcattattaaagatttcctaatatataaaatggataacaatct |
114 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
52739455 |
aatgcttgtgatttggtttgttaactcaactcataatgttatgattttacctatcaagcattcttaaagatttcctaacatataaaatggataacaatct |
52739356 |
T |
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| Q |
115 |
agcatatag |
123 |
Q |
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| T |
52739355 |
agcatatag |
52739347 |
T |
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