View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_47 (Length: 277)
Name: NF14404_low_47
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 47920703 - 47920953
Alignment:
| Q |
11 |
agatgaacaaacttagcattaatcatgtatataactaagnnnnnnnctagaacaatcaagtttctaactaaccgtccagcctgcttcgatgctttcaaaa |
110 |
Q |
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| T |
47920703 |
agatgaacaaacttagcattaatcatgtatataactaagaaaaaaactagaacaatcaagtgtctaactaaccgtccagcctgcttcgatgctttcaaaa |
47920802 |
T |
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| Q |
111 |
ttatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaacttttggattccacacattaatattcgcttgtgccc |
210 |
Q |
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| T |
47920803 |
ttatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaacttttggattccacacattaatattcgcttgtgccc |
47920902 |
T |
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| Q |
211 |
ctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacac |
261 |
Q |
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| T |
47920903 |
ctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacac |
47920953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 77 - 261
Target Start/End: Original strand, 47910163 - 47910344
Alignment:
| Q |
77 |
actaaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaact |
176 |
Q |
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| T |
47910163 |
actaaccgtccatcctgcttcaacactttctaaattatct---ccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaacc |
47910259 |
T |
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| Q |
177 |
tttggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacac |
261 |
Q |
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| T |
47910260 |
tttggattccatacgttaatattcgcttgggcgcctataaaattgaatgcgtatgccataagtaatgcatcctgcacaatcacac |
47910344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 261
Target Start/End: Original strand, 47941505 - 47941686
Alignment:
| Q |
77 |
actaaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaact |
176 |
Q |
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|||||||| ||| |||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
47941505 |
actaaccgcccaacctgcttcgatggtttcaa---tttcaagaccattggcagccttaagccatatttgagcagtagtgaaatcttctggtcgttcaacc |
47941601 |
T |
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| Q |
177 |
tttggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacac |
261 |
Q |
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| T |
47941602 |
tttggattccatatattaatatttcctagggcgcctataaaattgtatccaaatgtcgcaagatgtgcatcctgcatgatcacac |
47941686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 261
Target Start/End: Original strand, 47929103 - 47929285
Alignment:
| Q |
76 |
aactaaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaac |
175 |
Q |
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| T |
47929103 |
aactaaccgtccagcctgcttcaatgctttcgaaattattt---ccattatcagccttaagccacatttgagcggtagtgaaatcttctggtttgtcaac |
47929199 |
T |
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| Q |
176 |
ttttggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacac |
261 |
Q |
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| T |
47929200 |
ctttggattccaaacgttgatatttgcttgtgcgcctatataattatatccgtatgtcacaagatgagcatcctgcatgatcacac |
47929285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 47947427 - 47947602
Alignment:
| Q |
80 |
aaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaactttt |
179 |
Q |
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| T |
47947427 |
aaccatccagccagcttcaacgcttgcaaaattttca---ccattgttagccttaagccacatttgagccgtagtgaaatcttctggttgttcaacattt |
47947523 |
T |
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| Q |
180 |
ggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatca |
258 |
Q |
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| T |
47947524 |
ggattccatacgttgatgtttgcttgtgcgcctataaaattgaatcctaatgtcgcaagatgtgcatcctgcatgatca |
47947602 |
T |
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