View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_low_5 (Length: 723)

Name: NF14404_low_5
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_low_5
NF14404_low_5
[»] chr4 (8 HSPs)
chr4 (516-705)||(5228074-5228261)
chr4 (105-347)||(5228289-5228531)
chr4 (8-82)||(47965525-47965599)
chr4 (7-75)||(52525922-52525990)
chr4 (488-577)||(45394299-45394384)
chr4 (48-93)||(30179071-30179116)
chr4 (91-195)||(44841981-44842085)
chr4 (46-93)||(14866628-14866675)
[»] chr2 (9 HSPs)
chr2 (135-334)||(38137833-38138031)
chr2 (12-92)||(24538234-24538314)
chr2 (519-630)||(38138076-38138183)
chr2 (38-92)||(28296914-28296968)
chr2 (496-534)||(20606759-20606797)
chr2 (496-577)||(40584186-40584265)
chr2 (38-82)||(22142305-22142349)
chr2 (136-182)||(20606820-20606866)
chr2 (51-92)||(7828940-7828981)
[»] chr3 (7 HSPs)
chr3 (12-92)||(4737774-4737854)
chr3 (9-92)||(32077466-32077549)
chr3 (22-89)||(5578150-5578217)
chr3 (7-92)||(51646882-51646967)
chr3 (3-93)||(46835521-46835611)
chr3 (7-94)||(45640678-45640765)
chr3 (33-92)||(15451633-15451692)
[»] chr8 (5 HSPs)
chr8 (18-92)||(14836396-14836470)
chr8 (17-93)||(30850193-30850269)
chr8 (393-706)||(38883610-38883908)
chr8 (9-92)||(27229234-27229318)
chr8 (91-362)||(38883295-38883564)
[»] chr7 (7 HSPs)
chr7 (12-93)||(27965214-27965297)
chr7 (17-82)||(45824591-45824656)
chr7 (16-94)||(26000016-26000095)
chr7 (496-534)||(30581104-30581142)
chr7 (496-534)||(43659911-43659949)
chr7 (34-96)||(18196125-18196188)
chr7 (136-182)||(30581165-30581211)
[»] chr6 (2 HSPs)
chr6 (18-89)||(9852103-9852174)
chr6 (38-92)||(29279773-29279827)
[»] chr1 (4 HSPs)
chr1 (7-93)||(20602214-20602300)
chr1 (38-92)||(29308693-29308747)
chr1 (34-91)||(5933836-5933893)
chr1 (16-94)||(44621401-44621480)
[»] chr5 (2 HSPs)
chr5 (463-577)||(40367174-40367284)
chr5 (16-88)||(34509381-34509454)
[»] scaffold0071 (1 HSPs)
scaffold0071 (33-92)||(10499-10558)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 516 - 705
Target Start/End: Complemental strand, 5228261 - 5228074
Alignment:
Q  516 ttgaaattatgaagatgaaaaagttcaattttttaaaatatcaaatcatgtttgcattgaatgaaatcaatgaggtggttacgtgaaacaaattctaatt 615  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||| |    
T  5228261 ttgaaattatgaagatgaaaa-gttcaattcttttaaatatcaaat-atgtatgcattgaatgaaatcaaggaggtggttacgtgcaacaaattctaact 5228164  T
Q  616 caaatttgtttattg-nnnnnnnttggcacggtttcaagaagc--ataaaatgctcattaatgtaaaaagaaaaagaggtgcaggtccagatt 705  Q
    |||||| ||||||||        ||||||| ||||||||||||  ||||||| |||||||||   |||||||||||||||||| || ||||||    
T  5228163 caaattggtttattgaaatttttttggcactgtttcaagaagcatataaaatactcattaat---aaaagaaaaagaggtgcaagttcagatt 5228074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 105 - 347
Target Start/End: Complemental strand, 5228531 - 5228289
Alignment:
Q  105 ttggattaatcaagcacacaaattctattg-gcactctatgcattagatctttttgtctcttttctcccatcttcctctcaccttttcccatcctctcgg 203  Q
    |||||| ||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |  |||||||||||   |||||  ||||||||||||  |    
T  5228531 ttggatcaatcaagcacacaaattctattatgcactctatgcatcagatctttttgtctcct--ctcccatcttc---tcacccgttcccatcctcttag 5228437  T
Q  204 tccctagttttgcacaagccctcccttctacattatatcagcatatttcctctc-------agtgtt-gaccaacattattatatctcatgaaatgtttt 295  Q
    | ||  ||||||||||||||||||||||||| ||||||| ||||||||||||||       |||||| |||||||   |||||||||| |||||  | ||    
T  5228436 ttccaggttttgcacaagccctcccttctactttatatcggcatatttcctctcactcttgagtgttagaccaac---attatatctcgtgaaa--tatt 5228342  T
Q  296 gttttcaactaaaatatgaaatttgttgttacagttccacccg-tgctacgaa 347  Q
     |||||||||||||||| |||||||||||| || ||||| ||| |||||||||    
T  5228341 attttcaactaaaatattaaatttgttgttccaattccatccgatgctacgaa 5228289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 47965525 - 47965599
Alignment:
Q  8 tcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaa 82  Q
    |||||||||||||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||||    
T  47965525 tcagaacagtttggagccaaaaccatcaggattagggttggcacaaattgttagcaatgttattcatattagaaa 47965599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 52525922 - 52525990
Alignment:
Q  7 gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcata 75  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  52525922 gtcagaacaatttggagccaaaaccattagaattagggttgacacaaattgttagcaatgttattcata 52525990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 488 - 577
Target Start/End: Original strand, 45394299 - 45394384
Alignment:
Q  488 aaaaattcttcatgttttattattctcattgaaattatgaagatgaaaaagttcaattttttaaaatatcaaatcatgtttgcattgaat 577  Q
    |||||| ||||||| |||||||||||||||||||||||||||||  |||||||  |||||||||| ||||||||||| | ||||||||||    
T  45394299 aaaaatccttcatgctttattattctcattgaaattatgaagat--aaaagtt-tattttttaaattatcaaatcat-tatgcattgaat 45394384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 30179071 - 30179116
Alignment:
Q  48 gcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30179071 gcacaatttgttagcaatgttattcatattagaaataagtatgata 30179116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 44841981 - 44842085
Alignment:
Q  91 ataattaagagctattggattaatcaagcacacaaattctattgg-cactctatgcattagatctttttgtctcttttctcccatcttcctctcaccttt 189  Q
    |||||| ||||| ||| ||| |||||||| |||| ||||||||   ||||||||||| ||||| ||||||||| || ||| |||||||||||||||||||    
T  44841981 ataattgagagccattagatcaatcaagctcacacattctattatacactctatgcactagat-tttttgtctattatctgccatcttcctctcaccttt 44842079  T
Q  190 tcccat 195  Q
    ||||||    
T  44842080 tcccat 44842085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 14866628 - 14866675
Alignment:
Q  46 tggcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||||||||| ||| || |||||||||||||||||||||||||||||    
T  14866628 tggcacaatttgttaacattgttattcatattagaaataagtatgata 14866675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 135 - 334
Target Start/End: Original strand, 38137833 - 38138031
Alignment:
Q  135 gcactctatgcattagatctttttgtctcttttctcccatcttcctctcaccttttcccatcctctcggtccctagttttgcacaagccctcccttctac 234  Q
    |||||||||||||  |||| ||||||||| | ||||  |||||| ||| |||| ||||||||||||  || ||| |||||||||||||||||||||||||    
T  38137833 gcactctatgcatccgatcattttgtctcctctctc--atcttcttctaacctgttcccatcctcttagttcctggttttgcacaagccctcccttctac 38137930  T
Q  235 attatatcagcatatttcctctcagtgtt------gaccaacattattatatctcatgaaatgttttgttttcaactaaaatatgaaatttgttgttaca 328  Q
    |||||||| |||||||||||||| |||||      |||||||   ||||||||||||||||||  ||||||| ||||||||||| |||||||||||| ||    
T  38137931 attatatcggcatatttcctctcggtgttgtgttagaccaac---attatatctcatgaaatg--ttgtttttaactaaaatattaaatttgttgttcca 38138025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 24538314 - 24538234
Alignment:
Q  12 aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||| ||| || ||||||||||||||||||||||||||||    
T  24538314 aacagtttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagtatgat 24538234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 519 - 630
Target Start/End: Original strand, 38138076 - 38138183
Alignment:
Q  519 aaattatgaagatgaaaaagttcaattttttaaaatatcaaatcatgtttgcattgaatgaaatcaatgaggtggttacgtgaaacaaattctaattcaa 618  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||  |||||||||| |||||||||||||| || || || ||| ||||    
T  38138076 aaattatgaagatgaaaa-gttcaactttttaaa-tatcaaatcatgtatgcatt--atgaaatcaaggaggtggttacgtgcaaaaatttataactcaa 38138171  T
Q  619 atttgtttattg 630  Q
    ||| ||||||||    
T  38138172 attggtttattg 38138183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 28296914 - 28296968
Alignment:
Q  38 attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  28296914 attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat 28296968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 534
Target Start/End: Complemental strand, 20606797 - 20606759
Alignment:
Q  496 ttcatgttttattattctcattgaaattatgaagatgaa 534  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  20606797 ttcatgtttcattattctcattgaaattatgaagatgaa 20606759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 577
Target Start/End: Complemental strand, 40584265 - 40584186
Alignment:
Q  496 ttcatgttttattattctcattgaaattatgaagatgaaaaagttcaattttttaaaatatcaaatcatgtttgcattgaat 577  Q
    |||||| || |||||||| ||||||||||||||||||||||| ||  |||||| ||| ||||||||||| | |||| |||||    
T  40584265 ttcatgcttcattattcttattgaaattatgaagatgaaaaattt--atttttaaaattatcaaatcatttatgcaatgaat 40584186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 22142305 - 22142349
Alignment:
Q  38 attagggttggcacaatttattagcaatgttattcatattagaaa 82  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||    
T  22142305 attagggttggcacaatttgttaacaatgctattcatattagaaa 22142349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 20606866 - 20606820
Alignment:
Q  136 cactctatgcattagatctttttgtctcttttctcccatcttcctct 182  Q
    |||| |||||| ||||||||||| |||||| ||||||||||||||||    
T  20606866 cactatatgcactagatctttttatctcttctctcccatcttcctct 20606820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 7828940 - 7828981
Alignment:
Q  51 caatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||||| ||| || ||||||||||||||||||||||||||||    
T  7828940 caatttgttaacattgttattcatattagaaataagtatgat 7828981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 4737774 - 4737854
Alignment:
Q  12 aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4737774 aacagtttggagccaaaaccattagaattagggttggcacaatttgttagcaatgttattcatattagaaataagtatgat 4737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 32077466 - 32077549
Alignment:
Q  9 cagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||||||||| |  ||||||||||||| || || |||||||||||||||||||||||||||||||||||    
T  32077466 cagaacagtttggagccaaaaccatcaagattagggttggcataaattgttagcaatgttattcatattagaaataagtatgat 32077549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 5578150 - 5578217
Alignment:
Q  22 agccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtat 89  Q
    |||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  5578150 agccaaaaccatcagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 5578217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 51646967 - 51646882
Alignment:
Q  7 gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||| ||||||||||||||| ||| |  |||||||||| ||||| || ||| |||||||||||||||||||||||||||||||    
T  51646967 gtcagaatagtttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagtatgat 51646882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 46835521 - 46835611
Alignment:
Q  3 aacagtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||| || ||||||||| |||||||||||| |  |||||||||| |||||||| |||  | |||||||||||||||||||||||||||||    
T  46835521 aacagccacaacagtttgaagccaaaaccatcaagattagggttgacacaatttgttaatattgttattcatattagaaataagtatgata 46835611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 45640678 - 45640765
Alignment:
Q  7 gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa 94  Q
    ||||||||  |||||||||||||||||||| |||||||||| |||||||| ||| || ||||||| |||||||| |||| || |||||    
T  45640678 gtcagaactatttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataaataagataa 45640765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 15451692 - 15451633
Alignment:
Q  33 ttagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||||||||||||||| ||| ||| ||||||||||||   ||||||||||||||| ||||    
T  15451692 ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat 15451633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 14836470 - 14836396
Alignment:
Q  18 ttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||||||||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||    
T  14836470 ttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtatgat 14836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 30850193 - 30850269
Alignment:
Q  17 tttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||||||||||| |||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  30850193 tttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgata 30850269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 706
Target Start/End: Original strand, 38883610 - 38883908
Alignment:
Q  393 agttgtggttcattgcaacttcaaggttataacgaagagaagaggacacgtctgaaattgtaattgttgcagaggtttttattcctttctaattaaaaaa 492  Q
    ||||||| |||||| ||||||||||||||||| |||||| |||||||| || |||      ||||||||| || ||||| ||||||||  |||| ||||     
T  38883610 agttgtgattcattccaacttcaaggttataatgaagagtagaggacatgtatga------aattgttgcggaagttttcattccttttcaatttaaaat 38883703  T
Q  493 ttcttcatgttttattattctcattgaaattatgaagatgaaaaagttcaattttttaaaatatcaaatcatgtttgcattgaatgaaatcaatgaggtg 592  Q
       ||||||||| ||||||||| |||||||||| || ||  |||||||  ||||||| |||||||||||| ||| |||||||  | ||||||| | ||||    
T  38883704 ccgttcatgtttcattattctcgttgaaattataaaaat--aaaagtt--atttttt-aaatatcaaatcgtgtatgcattgggtaaaatcaagggggtg 38883798  T
Q  593 gttacgtgaaacaaattctaattcaaatttgtttattgnnnnnnnttggcacggtttcaagaagcataaaatgctcattaatgtaaaaagaaaaagaggt 692  Q
    ||||| || |||||||| ||| |||  |||| || |         || ||||  ||||||||||||||||||| | |||||   ||||||||||||||||    
T  38883799 gttacatgcaacaaattgtaactcatgtttgctt-tgtaaaaaaatttgcacaatttcaagaagcataaaatgtttattaa---aaaaagaaaaagaggt 38883894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 27229318 - 27229234
Alignment:
Q  9 cagaacagtttggagccaaaaccatta-gaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||| ||||||||||||| ||||| |||||||||||| | ||| |||||| ||||| |||||||||||||||||||||||||    
T  27229318 cagaacaatttggagccaaaatcattaagaattagggttgacgcaaattattaacaatgctattcatattagaaataagtatgat 27229234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 362
Target Start/End: Original strand, 38883295 - 38883564
Alignment:
Q  91 ataattaagagctattggattaatcaagcacacaaattctattgg-cactctatgcattagatcttttt--gtctcttttctcccatcttcctctcacct 187  Q
    |||||||||||||||| ||| |||||||  |||| ||||||| |  ||||| || || ||||| |||||  ||||||| |||||||||||||||||||||    
T  38883295 ataattaagagctattagatcaatcaagatcacatattctatcgtacactccatacaatagatatttttctgtctcttctctcccatcttcctctcacct 38883394  T
Q  188 tttc-ccatcctctcggtccctagttttgcacaagccctccc---ttctacattatatcagcatatttcctctcagtgttgaccaacattattatatctc 283  Q
    |||  ||||||||| | |  || |||| |||||||||| |||   |||| |||| ||||||||| ||||| | | ||||  |||||   ||||| || ||    
T  38883395 tttttccatcctcttg-tgactggtttcgcacaagcccgccccccttcttcattgtatcagcatctttccaccc-gtgt--accaa---tattaaatttc 38883487  T
Q  284 atgaaatgttttgttttcaactaaaatatgaaatttgttgttacagttccacccgtgctacgaaaaacgccccattcaa 362  Q
    |   ||||||  |||||||||||||||||||||||||||||| |||||||| | ||||||| || ||| | ||||||||    
T  38883488 acataatgtt--gttttcaactaaaatatgaaatttgttgttccagttccatcagtgctacaaagaacactccattcaa 38883564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 27965214 - 27965297
Alignment:
Q  12 aacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttatt--catattagaaataagtatgata 93  Q
    |||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||||||   |||||||||||||||||||||    
T  27965214 aacagtttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttatttatatattagaaataagtatgata 27965297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45824656 - 45824591
Alignment:
Q  17 tttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaa 82  Q
    |||||||||||||| || ||||||||||||||||||| || ||||||||| ||||  |||||||||    
T  45824656 tttggagccaaaactatcagaattagggttggcacaaattgttagcaatgctattgctattagaaa 45824591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 26000095 - 26000016
Alignment:
Q  16 gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa 94  Q
    ||||||||||||||||||| || |||||||||| |||| ||| ||| || |||||||  ||||||||||||||| |||||    
T  26000095 gtttggagccaaaaccatttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagataa 26000016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 534
Target Start/End: Complemental strand, 30581142 - 30581104
Alignment:
Q  496 ttcatgttttattattctcattgaaattatgaagatgaa 534  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  30581142 ttcatgtttcattattctcattgaaattatgaagatgaa 30581104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 534
Target Start/End: Original strand, 43659911 - 43659949
Alignment:
Q  496 ttcatgttttattattctcattgaaattatgaagatgaa 534  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  43659911 ttcatgtttcattattctcattgaaattatgaagatgaa 43659949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 18196188 - 18196125
Alignment:
Q  34 tagaattagggttggcacaatttattagcaatgttatt-catattagaaataagtatgataatt 96  Q
    ||||||||||||||||||| ||| |||||||| |||||   | |||||||||||||||||||||    
T  18196188 tagaattagggttggcacactttgttagcaattttattattttttagaaataagtatgataatt 18196125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 30581211 - 30581165
Alignment:
Q  136 cactctatgcattagatctttttgtctcttttctcccatcttcctct 182  Q
    |||| |||||| ||||||||||| |||||| ||||||||||||||||    
T  30581211 cactatatgcactagatctttttatctcttctctcccatcttcctct 30581165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 9852174 - 9852103
Alignment:
Q  18 ttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtat 89  Q
    ||||||||||||  ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  9852174 ttggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagtat 9852103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 29279827 - 29279773
Alignment:
Q  38 attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  29279827 attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat 29279773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 20602300 - 20602214
Alignment:
Q  7 gtcagaacagtttggagccaaaaccattagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgata 93  Q
    ||||||| ||||||||||||||||||| |  || ||||||||||||| || ||| |||||||||||||||||||| ||| |||||||    
T  20602300 gtcagaatagtttggagccaaaaccatcaagatgagggttggcacaaattgttaacaatgttattcatattagaattaaatatgata 20602214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 29308747 - 29308693
Alignment:
Q  38 attagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||    
T  29308747 attaaggttgacacaatttgttaacaatgttattcatattagaaataagtatgat 29308693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 5933836 - 5933893
Alignment:
Q  34 tagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatga 91  Q
    ||||||||||||||||||| ||| |||||||| |||||||||| |||||||| |||||    
T  5933836 tagaattagggttggcacactttgttagcaatattattcatatcagaaataaatatga 5933893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 44621401 - 44621480
Alignment:
Q  16 gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgataa 94  Q
    |||| |||||||||||||| || |||||||||| |||| ||| ||| || |||||||  ||||||||||||||| |||||    
T  44621401 gttttgagccaaaaccatttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagataa 44621480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 463 - 577
Target Start/End: Original strand, 40367174 - 40367284
Alignment:
Q  463 agaggtttttattcctttctaattaaaaaattcttcatgttttattattctcattgaaattatgaagatgaaaaagttcaattttttaaaatatcaaatc 562  Q
    ||||||||| |||| |||   ||| |||||| ||||||| || ||||||||||||||||||||||||||  |||||||  |||||||||| |||||||||    
T  40367174 agaggttttgattcatttacgatttaaaaatccttcatgcttcattattctcattgaaattatgaagat--aaaagtt-tattttttaaattatcaaatc 40367270  T
Q  563 atgtttgcattgaat 577  Q
    || | ||||||||||    
T  40367271 at-tatgcattgaat 40367284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 34509381 - 34509454
Alignment:
Q  16 gtttggagccaaaaccatt-agaattagggttggcacaatttattagcaatgttattcatattagaaataagta 88  Q
    |||||||||||||| |||| || |||||||||| |||| ||| ||| || |||||||  |||||||||||||||    
T  34509381 gtttggagccaaaatcatttaggattagggttgacacattttcttaacattgttattagtattagaaataagta 34509454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10499 - 10558
Alignment:
Q  33 ttagaattagggttggcacaatttattagcaatgttattcatattagaaataagtatgat 92  Q
    |||||||||||||||| ||| ||| ||||||||||||   ||||||||||||||| ||||    
T  10499 ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University