View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_50 (Length: 267)
Name: NF14404_low_50
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 56 - 247
Target Start/End: Original strand, 46352832 - 46353023
Alignment:
| Q |
56 |
gtccattaatttagtcaaatatcctattgcacatagtaaaagcaaatagatagagataatgcttcattttttaagggatcacatgacaaaaggaaacttg |
155 |
Q |
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| T |
46352832 |
gtccattaatttagtccaatatcctattgcacatagtaaaagcaaatacatagagataatgcttcattttttaagggatcacatgacaaaaggaaacttg |
46352931 |
T |
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| Q |
156 |
gtttttcagcattgtaacactaatgtgcatattgcaaattccatgaccaagtcattgaacattgaaacttttgaaagattgagaagcatgat |
247 |
Q |
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| T |
46352932 |
gtttttcagcattgtaatactaatgtgcatattgcaaattccatgaccaagtcattgaacattgaaacttttgaaagattgagaagcatgat |
46353023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 46352587 - 46352626
Alignment:
| Q |
8 |
gaggagcagagaggaaaatacaatgttcttaatggttaat |
47 |
Q |
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| T |
46352587 |
gaggatcaaagaggaaaatacaatgttcttaatggttaat |
46352626 |
T |
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