View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_53 (Length: 263)
Name: NF14404_low_53
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 7652046 - 7652282
Alignment:
| Q |
10 |
gattattctgatgaggagtttgattatgaaatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatg |
109 |
Q |
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| T |
7652046 |
gattattctgatgaggagtttgattatgaaatagagaatactttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatg |
7652145 |
T |
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| Q |
110 |
ctcaaaagatcagtgcaggaaatggtggaggcattgaaataaaaggtggtggcggaagtggtggagtacctatgcctgttcaagttcattccttggctgg |
209 |
Q |
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| T |
7652146 |
ctcaaaagatcagtgcaggaaatggtggaggcattgaaataaaaggtggtggcggaagtgttggaggacctatgcctgttcaagttcattccttggctgg |
7652245 |
T |
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| Q |
210 |
tggaaatgggaatggaggaaagaaaggtggtggtggc |
246 |
Q |
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| T |
7652246 |
tggaaatgggaatggaggaaagaaaggtggtggtggc |
7652282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 7657456 - 7657560
Alignment:
| Q |
13 |
tattctgatgaggagtttgattatgaaatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctc |
112 |
Q |
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| T |
7657456 |
tattctgatgaggagtttgatgatgagatggaacatcctttgaataagatgaaactacctatggggggtaatggtcctgctcacatgatgatgaatgctc |
7657555 |
T |
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| Q |
113 |
aaaag |
117 |
Q |
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| T |
7657556 |
aaaag |
7657560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 48572934 - 48572896
Alignment:
| Q |
207 |
tggtggaaatgggaatggaggaaagaaaggtggtggtgg |
245 |
Q |
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| T |
48572934 |
tggtggaaatggcaatggaggaaagaaaggtggtggtgg |
48572896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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