View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_54 (Length: 260)
Name: NF14404_low_54
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 3968483 - 3968698
Alignment:
| Q |
7 |
ttcatagtatctgagtttgttgaccttctataaaaagttcaaaggatcacacataacaatgttgagtcacctagatctatgattttagaattaaaatgat |
106 |
Q |
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| T |
3968483 |
ttcatagtatctgagtttgttaaccttctataaaaagttcaaaggatcacgcataacaatgttgagtcacctagatctatgattttggaattaaaaggat |
3968582 |
T |
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| Q |
107 |
tgattttgtcatccataaaggattaacagcacaactcaacccaaaatttaaatcttgccaattatgagtttgtatgttgtttagcgccaacacctttaat |
206 |
Q |
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| T |
3968583 |
tgattttgtcattcaaaaaggattagcag--cagctcaacccaaaatttgaatcttaccaattatgagtttgtatgttgtttagcgccaacacctttaat |
3968680 |
T |
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| Q |
207 |
cacatgaaattatattca |
224 |
Q |
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| T |
3968681 |
cacatgaaattatattca |
3968698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 10950740 - 10950785
Alignment:
| Q |
23 |
ttgttgaccttctataaaaagttcaaaggatcacacataacaatgt |
68 |
Q |
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| T |
10950740 |
ttgttgaccttctacataaagttcaaagggtcacatataacaatgt |
10950785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 10958745 - 10958790
Alignment:
| Q |
23 |
ttgttgaccttctataaaaagttcaaaggatcacacataacaatgt |
68 |
Q |
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| T |
10958745 |
ttgttgaccttctacataaagttcaaagggtcacatataacaatgt |
10958790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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