View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_low_55 (Length: 260)

Name: NF14404_low_55
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_low_55
NF14404_low_55
[»] chr2 (2 HSPs)
chr2 (100-243)||(7702291-7702440)
chr2 (3-56)||(7702484-7702537)
[»] chr4 (5 HSPs)
chr4 (133-185)||(39064455-39064507)
chr4 (3-56)||(4904132-4904185)
chr4 (15-56)||(21317493-21317534)
chr4 (4-56)||(4881062-4881114)
chr4 (3-43)||(27739767-27739807)
[»] chr1 (2 HSPs)
chr1 (3-55)||(18308204-18308256)
chr1 (9-56)||(3399677-3399724)
[»] chr8 (4 HSPs)
chr8 (3-56)||(14997676-14997729)
chr8 (3-45)||(5528809-5528851)
chr8 (1-45)||(19448514-19448558)
chr8 (1-45)||(19532518-19532562)
[»] chr7 (4 HSPs)
chr7 (3-56)||(30089790-30089843)
chr7 (4-56)||(26608532-26608584)
chr7 (3-45)||(9242476-9242518)
chr7 (3-56)||(20277352-20277405)
[»] chr5 (4 HSPs)
chr5 (3-56)||(17037598-17037651)
chr5 (3-56)||(19985050-19985103)
chr5 (6-46)||(31571098-31571138)
chr5 (100-128)||(38450055-38450083)
[»] chr3 (3 HSPs)
chr3 (12-56)||(26707914-26707958)
chr3 (9-56)||(26735689-26735736)
chr3 (3-56)||(36035344-36035397)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-56)||(446277-446328)
[»] chr6 (3 HSPs)
chr6 (3-42)||(6684162-6684201)
chr6 (15-54)||(27969921-27969960)
chr6 (3-43)||(14669338-14669378)
[»] scaffold0684 (1 HSPs)
scaffold0684 (3-45)||(739-781)
[»] scaffold0069 (1 HSPs)
scaffold0069 (3-45)||(40690-40732)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 7702440 - 7702291
Alignment:
Q  100 catgtgttactagatgtcaattatgttgttg------atctgttcattatccaaattgcgtgtttctcttcttgttttacttccggcttatttgcaatag 193  Q
    ||||||||||||||||||||||||||||| |      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7702440 catgtgttactagatgtcaattatgttgtagtactggatctgttcattatccaaattgcgtgtttctcttcttgttttacttccggcttatttgcaatag 7702341  T
Q  194 taaaataacttcgagatcatttagttattgaacagaattattatcatatt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7702340 taaaataacttcgagatcatttagttattgaacagaattattatcatatt 7702291  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 7702537 - 7702484
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    |||||||||||||||||||| || | |||||||||||||||||| |||||||||    
T  7702537 taactaaagctctttagtaatatgggctttacctaacaattgtacaaatgttac 7702484  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 39064507 - 39064455
Alignment:
Q  133 ctgttcattatccaaattgcgtgtttctcttcttgttttacttccggcttatt 185  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  39064507 ctgtccattacccaaattgcgtgtttgtcttcttgttttacttcctgcttatt 39064455  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 4904132 - 4904185
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    |||||||||| |||||||||||    |||||||||||||||||| |||||||||    
T  4904132 taactaaagcactttagtaacaagtgctttacctaacaattgtacaaatgttac 4904185  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 21317534 - 21317493
Alignment:
Q  15 tttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    |||||||||| || ||||||||||||||||| ||||||||||    
T  21317534 tttagtaacacagcctttacctaacaattgttgaaatgttac 21317493  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 4881062 - 4881114
Alignment:
Q  4 aactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    ||||||||| |||||||||||  ||||||||||||||||| || |||| ||||    
T  4881062 aactaaagcactttagtaacacggactttacctaacaattatacaaatattac 4881114  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 27739767 - 27739807
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaatt 43  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  27739767 taactaaagctcttcagtaacatgggctttacctaacaatt 27739807  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18308256 - 18308204
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgtta 55  Q
    |||||||||| ||| ||||||| || |||||||||||||||||||||||||||    
T  18308256 taactaaagcccttcagtaacacaggctttacctaacaattgtagaaatgtta 18308204  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 3399724 - 3399677
Alignment:
Q  9 aagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    ||||| |||||||||||||| ||||||||||||||||  |||||||||    
T  3399724 aagctatttagtaacatagattttacctaacaattgttcaaatgttac 3399677  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 14997729 - 14997676
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    ||||||||||||||||||||||| |  |||||||||||||| || |||||||||    
T  14997729 taactaaagctctttagtaacatgggttttacctaacaattctacaaatgttac 14997676  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 5528851 - 5528809
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgt 45  Q
    |||||||| ||||||||||||| |||||||| |||||||||||    
T  5528851 taactaaaactctttagtaacacagactttatctaacaattgt 5528809  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19448558 - 19448514
Alignment:
Q  1 tataactaaagctctttagtaacatagactttacctaacaattgt 45  Q
    |||||||||| |||||||||||||  ||||||| |||||||||||    
T  19448558 tataactaaaactctttagtaacacggactttatctaacaattgt 19448514  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19532518 - 19532562
Alignment:
Q  1 tataactaaagctctttagtaacatagactttacctaacaattgt 45  Q
    |||||||||| |||||||||||||  ||||||| |||||||||||    
T  19532518 tataactaaaactctttagtaacacggactttatctaacaattgt 19532562  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 30089843 - 30089790
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    ||||||||||||||||||||||| | |||| ||||||||||||  |||||||||    
T  30089843 taactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttac 30089790  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 26608532 - 26608584
Alignment:
Q  4 aactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    |||||||||||||||||||||| | ||||| |||||||||||  |||||||||    
T  26608532 aactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttac 26608584  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 9242476 - 9242518
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgt 45  Q
    |||||||| |||||||||||||| ||||||| |||||||||||    
T  9242476 taactaaaactctttagtaacatggactttatctaacaattgt 9242518  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 20277352 - 20277405
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    ||||||||||||||||||||||    |||||||||||||||||  |||||||||    
T  20277352 taactaaagctctttagtaacaggtgctttacctaacaattgtttaaatgttac 20277405  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 17037651 - 17037598
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    |||||||| |||||||||||||  |||||||||||||||||||  |||||||||    
T  17037651 taactaaaactctttagtaacactgactttacctaacaattgttcaaatgttac 17037598  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 19985103 - 19985050
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    |||||||| |||||||||||| | ||||||||||||||||| |  |||||||||    
T  19985103 taactaaaactctttagtaacctggactttacctaacaattattcaaatgttac 19985050  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 31571138 - 31571098
Alignment:
Q  6 ctaaagctctttagtaacatagactttacctaacaattgta 46  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  31571138 ctaaagctctttagtaacatgggttttacctaacaattgta 31571098  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 38450055 - 38450083
Alignment:
Q  100 catgtgttactagatgtcaattatgttgt 128  Q
    |||||||||||||||||||||||||||||    
T  38450055 catgtgttactagatgtcaattatgttgt 38450083  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 26707958 - 26707914
Alignment:
Q  12 ctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||    
T  26707958 ctctttagtaacagagactttacctaacaattgttcaaatgttac 26707914  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 26735736 - 26735689
Alignment:
Q  9 aagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    ||||||||||||||||| || ||||||||||||||||  |||||||||    
T  26735736 aagctctttagtaacatggattttacctaacaattgttcaaatgttac 26735689  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 36035397 - 36035344
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    ||||||||||||||||||||||    |||||||||||||||||| || ||||||    
T  36035397 taactaaagctctttagtaacacgagctttacctaacaattgtacaattgttac 36035344  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 446277 - 446328
Alignment:
Q  5 actaaagctctttagtaacatagactttacctaacaattgtagaaatgttac 56  Q
    |||||||||||||||||| || |||||| ||||||||||||  |||||||||    
T  446277 actaaagctctttagtaatatggacttttcctaacaattgttcaaatgttac 446328  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 6684201 - 6684162
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaat 42  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  6684201 taactaaaactctttagtaacatggactttacctaacaat 6684162  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 27969921 - 27969960
Alignment:
Q  15 tttagtaacatagactttacctaacaattgtagaaatgtt 54  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  27969921 tttagtaacatagactttacctaacatttgttgaaatgtt 27969960  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 14669338 - 14669378
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaatt 43  Q
    |||||||| |||||||||||||  |||||||||||||||||    
T  14669338 taactaaaactctttagtaacacggactttacctaacaatt 14669378  T

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Target: scaffold0684 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 739 - 781
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgt 45  Q
    |||||||| |||||||||||||| ||||||| |||||||||||    
T  739 taactaaaactctttagtaacatggactttatctaacaattgt 781  T

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Target: scaffold0069 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 40690 - 40732
Alignment:
Q  3 taactaaagctctttagtaacatagactttacctaacaattgt 45  Q
    |||||||| |||||||||||||| ||||||| |||||||||||    
T  40690 taactaaaactctttagtaacatggactttatctaacaattgt 40732  T

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