View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_low_60 (Length: 251)

Name: NF14404_low_60
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_low_60
NF14404_low_60
[»] chr8 (14 HSPs)
chr8 (1-240)||(6274916-6275155)
chr8 (36-155)||(6289488-6289607)
chr8 (36-155)||(6321870-6321989)
chr8 (36-155)||(6332444-6332563)
chr8 (66-154)||(6424528-6424616)
chr8 (55-129)||(6363662-6363736)
chr8 (65-129)||(6391471-6391535)
chr8 (60-157)||(7459618-7459715)
chr8 (71-155)||(6352831-6352915)
chr8 (60-115)||(6457568-6457623)
chr8 (60-115)||(6263797-6263852)
chr8 (65-116)||(6410646-6410697)
chr8 (72-115)||(6451379-6451422)
chr8 (65-115)||(6370575-6370625)
[»] chr3 (1 HSPs)
chr3 (60-116)||(36744661-36744717)
[»] chr5 (1 HSPs)
chr5 (58-112)||(9604082-9604136)
[»] chr2 (2 HSPs)
chr2 (60-116)||(42693651-42693707)
chr2 (60-115)||(42688093-42688148)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6275155 - 6274916
Alignment:
Q  1 tggaaacaaattaatttcatagaacttttatatttctcttactttgaaaagtgaatcaatctggatggatgactgatgaagaatttacaagagagatgat 100  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6275155 tggaaagaaattaatttcataaaacttttatatttctcttactttgaaaagtgaatcaatctggatggatgactgacgaagaatttacaagagagatgat 6275056  T
Q  101 tgctggtgtaaatccacacatcatcaaaagaattcaggtaaacttaatagtttaataattgttatgcaaacacatacactaaaataagaattttgtatcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6275055 tgctggtgtaaatccacacatcatcaaaagaattcaggtaaacttaatagtttaataattgttatgcaaacacataaactaaaataagaattttgtatcc 6274956  T
Q  201 atttttcatcgtagttttgtaattgttaaccttattattg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6274955 atttttcatcgtagttttgtaattgttaaccttattattg 6274916  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 6289607 - 6289488
Alignment:
Q  36 ctcttactttgaaaagtgaatcaatctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaagaattc 135  Q
    |||||| |||||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||    
T  6289607 ctcttattttgagcagttaatcagtctggatggatgactgatgaagaatttacaagagagatgattgctggtgtgaatccacacattatcaaaagacttc 6289508  T
Q  136 aggtaaacttaatagtttaa 155  Q
    |||||||||| |||||||||    
T  6289507 aggtaaacttcatagtttaa 6289488  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 6321989 - 6321870
Alignment:
Q  36 ctcttactttgaaaagtgaatcaatctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaagaattc 135  Q
    |||||| |||||  ||| ||||| ||||  ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| || ||||||||||    
T  6321989 ctcttattttgagcagttaatcagtctgcgtggatgactgatgaagaatttgcaagggagatgattgctggtgtgaatccacacattataaaaagaattc 6321890  T
Q  136 aggtaaacttaatagtttaa 155  Q
    ||||||||||||||||||||    
T  6321889 aggtaaacttaatagtttaa 6321870  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 6332563 - 6332444
Alignment:
Q  36 ctcttactttgaaaagtgaatcaatctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaagaattc 135  Q
    |||||| |||||  ||| ||||| |||| |||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||||| ||||||||| |||    
T  6332563 ctcttattttgagcagttaatcagtctgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatccacacataatcaaaagacttc 6332464  T
Q  136 aggtaaacttaatagtttaa 155  Q
    |||||||||| |||||||||    
T  6332463 aggtaaacttgatagtttaa 6332444  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 6424616 - 6424528
Alignment:
Q  66 tggatgactgatgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaagaattca-ggtaaacttaatagttta 154  Q
    |||||||||||||| |||||| |||| |||||||||||||| || ||||||||||||||||||| || ||| |||||| |||||||||||    
T  6424616 tggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa-aactcacggtaaagttaatagttta 6424528  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 6363736 - 6363662
Alignment:
Q  55 atcaatctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaa 129  Q
    |||| |||| ||||||||||||||| |||||| |||| |||||||||||||| || |||||||||||||| ||||    
T  6363736 atcattctgcatggatgactgatgaggaatttgcaagggagatgattgctggggtgaatccacacatcataaaaa 6363662  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 6391535 - 6391471
Alignment:
Q  65 atggatgactgatgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaa 129  Q
    ||||||||||||||| |||||| |||| ||||||||||||||||| |||||| || |||||||||    
T  6391535 atggatgactgatgaggaatttgcaagggagatgattgctggtgtgaatccaaacgtcatcaaaa 6391471  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 7459715 - 7459618
Alignment:
Q  60 tctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaagaattcaggtaaacttaatagtttaata 157  Q
    |||| ||||||||||||||| |||||  ||||  ||||||||||||| || ||||| || |||||||||| | ||| |||||||| || |||||||||    
T  7459715 tctgcatggatgactgatgaggaattcgcaaggcagatgattgctggggtgaatcctcatatcatcaaaaaacttctggtaaactcaagagtttaata 7459618  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 6352915 - 6352831
Alignment:
Q  71 gactgatgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaagaattcaggtaaacttaatagtttaa 155  Q
    ||||||||| |||||| |||| |||||||||||||| || || |||||||||||||||| | ||  ||||||  |||||||||||    
T  6352915 gactgatgaggaatttgcaagggagatgattgctggggtgaacccacacatcatcaaaaaactttcggtaaagctaatagtttaa 6352831  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 6457623 - 6457568
Alignment:
Q  60 tctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatcc 115  Q
    |||| ||||||||| ||||||||||||  |||||||||| ||||||||||||||||    
T  6457623 tctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcc 6457568  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 6263852 - 6263797
Alignment:
Q  60 tctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatcc 115  Q
    |||| ||||||||||||||| ||||||  |||||||||  ||||||||||||||||    
T  6263852 tctgcatggatgactgatgatgaatttggaagagagattcttgctggtgtaaatcc 6263797  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 6410697 - 6410646
Alignment:
Q  65 atggatgactgatgaagaatttacaagagagatgattgctggtgtaaatcca 116  Q
    ||||||||||||||| |||||  |||||||||| ||||||||||| ||||||    
T  6410697 atggatgactgatgaggaattcgcaagagagataattgctggtgtgaatcca 6410646  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 6451422 - 6451379
Alignment:
Q  72 actgatgaagaatttacaagagagatgattgctggtgtaaatcc 115  Q
    |||||||||||||||  |||||||||| ||||||||||||||||    
T  6451422 actgatgaagaatttggaagagagatgcttgctggtgtaaatcc 6451379  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 6370625 - 6370575
Alignment:
Q  65 atggatgactgatgaagaatttacaagagagatgattgctggtgtaaatcc 115  Q
    ||||||| ||||||| |||||| ||||| |||||||||||||||| |||||    
T  6370625 atggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc 6370575  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 36744661 - 36744717
Alignment:
Q  60 tctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatcca 116  Q
    |||| |||||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  36744661 tctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatcca 36744717  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 9604082 - 9604136
Alignment:
Q  58 aatctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaa 112  Q
    |||||| ||||||||||||||||||||||  |||||||||| ||||||| |||||    
T  9604082 aatctgcatggatgactgatgaagaatttggaagagagatggttgctggagtaaa 9604136  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 42693707 - 42693651
Alignment:
Q  60 tctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatcca 116  Q
    |||| |||||||||||||||||||||| ||||||| ||| | ||||| |||||||||    
T  42693707 tctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaatcca 42693651  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 42688093 - 42688148
Alignment:
Q  60 tctggatggatgactgatgaagaatttacaagagagatgattgctggtgtaaatcc 115  Q
    |||| ||||||||| |||||||| ||| ||||||| ||| ||||||||||||||||    
T  42688093 tctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatcc 42688148  T

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