View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14404_low_66 (Length: 247)
Name: NF14404_low_66
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_66 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 49017531 - 49017667
Alignment:
| Q |
15 |
aaaattatttaaaagttatcaactaaactaaacataatgataaacgtcatttgattgtttttaaaactatctagtgacttggagaataaagagaatcgtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49017531 |
aaaattatttaaaagttatcaactaaactaaacataatgataaacgtcatttgattgtttttaaaactatctagtgacttggagaataaagagaatcgtt |
49017630 |
T |
|
| Q |
115 |
tttaattttgatgttgatatgggtgcatgcatgcttt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49017631 |
tttaattttgatgttgatatgggtgcatgcatgcttt |
49017667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University