View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14404_low_69 (Length: 238)

Name: NF14404_low_69
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14404_low_69
NF14404_low_69
[»] chr8 (15 HSPs)
chr8 (144-222)||(45396703-45396781)
chr8 (18-72)||(4830022-4830076)
chr8 (30-75)||(54939-54984)
chr8 (30-63)||(7839120-7839153)
chr8 (18-75)||(14279561-14279618)
chr8 (18-47)||(27134438-27134467)
chr8 (18-75)||(29186516-29186573)
chr8 (18-75)||(38763505-38763562)
chr8 (18-75)||(40795391-40795448)
chr8 (22-75)||(41472496-41472549)
chr8 (18-50)||(22941206-22941238)
chr8 (18-62)||(30623307-30623351)
chr8 (18-62)||(32192908-32192952)
chr8 (18-50)||(40392058-40392090)
chr8 (19-59)||(41603076-41603116)
[»] chr4 (16 HSPs)
chr4 (18-75)||(30380544-30380601)
chr4 (19-62)||(32737738-32737781)
chr4 (18-62)||(3936641-3936685)
chr4 (18-58)||(10069095-10069135)
chr4 (28-62)||(29808271-29808305)
chr4 (18-63)||(1432870-1432915)
chr4 (18-55)||(51004033-51004070)
chr4 (18-75)||(55061051-55061108)
chr4 (18-74)||(15170090-15170146)
chr4 (22-74)||(31041707-31041759)
chr4 (18-50)||(39411768-39411800)
chr4 (18-50)||(40070983-40071015)
chr4 (18-62)||(44221461-44221505)
chr4 (18-74)||(46745204-46745260)
chr4 (18-50)||(48251923-48251955)
chr4 (19-63)||(56497610-56497654)
[»] chr6 (15 HSPs)
chr6 (18-75)||(6160659-6160715)
chr6 (18-75)||(9444971-9445028)
chr6 (18-62)||(9111061-9111105)
chr6 (19-75)||(9665325-9665381)
chr6 (18-59)||(20744152-20744193)
chr6 (30-75)||(21029356-21029401)
chr6 (22-59)||(26548269-26548306)
chr6 (18-62)||(2726420-2726464)
chr6 (19-75)||(9977072-9977128)
chr6 (19-59)||(12215768-12215808)
chr6 (18-50)||(12700436-12700468)
chr6 (26-62)||(12808891-12808927)
chr6 (18-58)||(21598971-21599011)
chr6 (18-50)||(28951413-28951445)
chr6 (18-50)||(33938694-33938726)
[»] chr5 (15 HSPs)
chr5 (18-75)||(11647211-11647268)
chr5 (18-62)||(31708149-31708193)
chr5 (17-75)||(18999962-19000020)
chr5 (18-74)||(27903127-27903183)
chr5 (28-75)||(781887-781934)
chr5 (23-74)||(29225107-29225158)
chr5 (18-75)||(10199033-10199090)
chr5 (18-75)||(16579364-16579421)
chr5 (18-75)||(32737826-32737882)
chr5 (18-75)||(37932344-37932401)
chr5 (23-75)||(13796349-13796401)
chr5 (18-50)||(18589882-18589914)
chr5 (18-50)||(31602840-31602872)
chr5 (18-50)||(33645704-33645736)
chr5 (18-58)||(36162896-36162936)
[»] chr3 (28 HSPs)
chr3 (18-75)||(27432248-27432305)
chr3 (18-75)||(52575961-52576018)
chr3 (18-63)||(7938738-7938783)
chr3 (18-75)||(28430555-28430612)
chr3 (18-75)||(38894051-38894108)
chr3 (18-63)||(53996313-53996358)
chr3 (18-62)||(21914074-21914118)
chr3 (18-65)||(8139729-8139776)
chr3 (28-75)||(10440708-10440755)
chr3 (18-64)||(22486697-22486743)
chr3 (18-48)||(35548305-35548335)
chr3 (20-62)||(42074119-42074161)
chr3 (18-75)||(8942031-8942087)
chr3 (18-75)||(9856095-9856152)
chr3 (18-59)||(25441506-25441547)
chr3 (30-63)||(39408266-39408299)
chr3 (18-50)||(6901469-6901501)
chr3 (18-62)||(19939044-19939088)
chr3 (18-62)||(21549052-21549096)
chr3 (23-75)||(21925710-21925762)
chr3 (30-62)||(25902806-25902838)
chr3 (18-50)||(27397627-27397659)
chr3 (18-62)||(28244107-28244151)
chr3 (18-62)||(32303374-32303418)
chr3 (18-62)||(35191820-35191864)
chr3 (18-74)||(38898200-38898256)
chr3 (18-50)||(43490432-43490464)
chr3 (18-62)||(54230102-54230146)
[»] chr1 (15 HSPs)
chr1 (18-63)||(16580801-16580846)
chr1 (28-75)||(52434615-52434662)
chr1 (18-75)||(28832161-28832218)
chr1 (18-75)||(39949826-39949883)
chr1 (18-75)||(45701342-45701399)
chr1 (18-62)||(34766874-34766918)
chr1 (28-62)||(30937499-30937533)
chr1 (18-72)||(32560987-32561041)
chr1 (18-75)||(11410641-11410698)
chr1 (28-73)||(28455345-28455390)
chr1 (18-75)||(32944750-32944807)
chr1 (18-62)||(10132447-10132491)
chr1 (18-50)||(15382834-15382866)
chr1 (23-75)||(38862121-38862173)
chr1 (18-50)||(48681948-48681980)
[»] chr7 (15 HSPs)
chr7 (18-62)||(9522926-9522970)
chr7 (18-75)||(31292759-31292816)
chr7 (18-74)||(41029286-41029342)
chr7 (18-48)||(10555360-10555390)
chr7 (18-59)||(5041353-5041394)
chr7 (18-59)||(30296347-30296388)
chr7 (18-75)||(34773245-34773302)
chr7 (18-63)||(37624557-37624602)
chr7 (19-59)||(6565540-6565580)
chr7 (18-62)||(7872751-7872795)
chr7 (18-50)||(21136845-21136877)
chr7 (18-50)||(25106074-25106106)
chr7 (19-51)||(25674378-25674410)
chr7 (18-62)||(38553832-38553876)
chr7 (18-50)||(46659410-46659442)
[»] scaffold0122 (1 HSPs)
scaffold0122 (18-59)||(14192-14233)
[»] chr2 (19 HSPs)
chr2 (18-63)||(6579283-6579328)
chr2 (18-62)||(2256985-2257029)
chr2 (18-62)||(35727451-35727495)
chr2 (19-62)||(10560339-10560382)
chr2 (18-61)||(13196714-13196757)
chr2 (18-75)||(231583-231640)
chr2 (18-75)||(7350560-7350617)
chr2 (18-63)||(16221348-16221393)
chr2 (18-75)||(18782531-18782587)
chr2 (18-75)||(23407008-23407065)
chr2 (18-58)||(833076-833116)
chr2 (18-58)||(9383216-9383256)
chr2 (19-63)||(20455906-20455950)
chr2 (30-62)||(25192188-25192220)
chr2 (18-62)||(25274832-25274876)
chr2 (26-58)||(29979931-29979963)
chr2 (18-58)||(32957550-32957590)
chr2 (18-50)||(33966335-33966367)
chr2 (18-62)||(41668669-41668713)
[»] scaffold0008 (1 HSPs)
scaffold0008 (19-59)||(122906-122946)
[»] scaffold0019 (1 HSPs)
scaffold0019 (26-69)||(134650-134693)
[»] scaffold0154 (1 HSPs)
scaffold0154 (18-63)||(37549-37594)
[»] scaffold0262 (1 HSPs)
scaffold0262 (19-59)||(15936-15976)
[»] scaffold0040 (1 HSPs)
scaffold0040 (18-50)||(56798-56830)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 45396703 - 45396781
Alignment:
Q  144 aacaaatcgatacaatactcttaaaagcaattatttatcaaagaacacaactacctcctccaagtgaatggcttggcac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45396703 aacaaatcgatacaatactcttaaaagcaattatttatcaaagaacacaactacctcctccaagtgaatggcttggcac 45396781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 4830022 - 4830076
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccac 72  Q
    ||||||||| |||||| ||||||||||||||||  ||||||||||| | ||||||    
T  4830022 gttggtatggacaatgcataatatatgcaaggttcggggttcgaatcccgaccac 4830076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 54984 - 54939
Alignment:
Q  30 aatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||||| |||||| |||||||||||||||||| | ||||||    
T  54984 aatgtataatacatgcaaagtatggggttcgaattctaaacaccac 54939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 7839153 - 7839120
Alignment:
Q  30 aatgtataatatatgcaaggtatggggttcgaat 63  Q
    |||| |||||||||||||||||||||||||||||    
T  7839153 aatgcataatatatgcaaggtatggggttcgaat 7839120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 14279618 - 14279561
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||  |||||| |||| |||||||||||  |||||||||| ||||||||||||    
T  14279618 gttggtatagacaatgcataaaatatgcaaggttcggggttcgaactctgaccaccac 14279561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 27134467 - 27134438
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaa 47  Q
    ||||||||||||||||||||||||||||||    
T  27134467 gttggtatgaacaatgtataatatatgcaa 27134438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 29186516 - 29186573
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||| | ||||||  |||||||||||||||||| ||||| ||| |||||||||||    
T  29186516 gttggtaaggacaatgcgtaatatatgcaaggtatgaggttcaaatcctgaccaccac 29186573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 38763562 - 38763505
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||| || |||||| |||||||||||||||| |||||||||||  ||| |||||||    
T  38763562 gttggtttggacaatgcataatatatgcaaggtctggggttcgaaccctggccaccac 38763505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 40795391 - 40795448
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||  ||||||||||||||||  ||||||| ||||| | |||||||    
T  40795391 gttggtatgaacaatacataatatatgcaaggtccggggttctaattccggccaccac 40795448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 41472496 - 41472549
Alignment:
Q  22 gtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||||||||||||||||  | ||||  ||||| |||||||||    
T  41472496 gtatgaacaatgtataatatatgcaaggttcgaggtttaaattccgaccaccac 41472549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 22941206 - 22941238
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||||||||||| |||||||||||||||||    
T  22941206 gttggtatgaacaatttataatatatgcaaggt 22941238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 30623307 - 30623351
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| | |||||| |||||||||||||||| |||||||||||    
T  30623307 gttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 30623351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 32192908 - 32192952
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||||| |||||| ||||||||||||||||  ||||||||||    
T  32192908 gttggtatggacaatgcataatatatgcaaggttcggggttcgaa 32192952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 40392090 - 40392058
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  40392090 gttggtatgaacaatggataatatatgcaaggt 40392058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 41603076 - 41603116
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  41603076 ttggtatgaacaatgcataatatatgtaaggtctggggttc 41603116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 30380544 - 30380601
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  30380544 gttggtaaggacaatgtataatatatgcaaggtttggggttcgaattccgaccaccac 30380601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 32737781 - 32737738
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  32737781 ttggtatggacaatgtataatatatgcaaggtctggggttcgaa 32737738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 3936641 - 3936685
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||    
T  3936641 gttggtatgaacaatgcataatatatgcaaggtccggggttcgaa 3936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 10069135 - 10069095
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggtt 58  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  10069135 gttggtatgaacaatgtataatatatgcaaagtttggggtt 10069095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 29808305 - 29808271
Alignment:
Q  28 acaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||| ||||||||||||||||||||||||||||    
T  29808305 acaatgcataatatatgcaaggtatggggttcgaa 29808271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1432870 - 1432915
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    ||||||| ||||| |||||||||||||||||||  |||||||||||    
T  1432870 gttggtaagaacagtgtataatatatgcaaggtccggggttcgaat 1432915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 51004070 - 51004033
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggg 55  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  51004070 gttggtaagaacaatgtataatatatgcaaggtttggg 51004033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 55061051 - 55061108
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||| | |||||| ||||||||||||||||  ||||||| ||||| |||||||||    
T  55061051 gttggtacggacaatgcataatatatgcaaggtcgggggttcaaattccgaccaccac 55061108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 15170146 - 15170090
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccacca 74  Q
    |||||||||||||||| ||||||||||||| || |  |||||||||||  |||||||    
T  15170146 gttggtatgaacaatgcataatatatgcaaagtcttaggttcgaattccaaccacca 15170090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 31041759 - 31041707
Alignment:
Q  22 gtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccacca 74  Q
    ||||| |||||||||||||||||||| ||  |||||||||| || ||||||||    
T  31041759 gtatggacaatgtataatatatgcaatgtccggggttcgaactccgaccacca 31041707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 39411768 - 39411800
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||| |||||||||||||||||||||||||    
T  39411768 gttggtaagaacaatgtataatatatgcaaggt 39411800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 40071015 - 40070983
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  40071015 gttggtatgaacaatgcataatatatgcaaggt 40070983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 44221461 - 44221505
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||||| |||||| |||||||||||||||| || ||||||||    
T  44221461 gttggtatggacaatgcataatatatgcaaggtctgaggttcgaa 44221505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 46745204 - 46745260
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccacca 74  Q
    |||| |||| |||||||||||||||||||||||| | || ||||| |||| ||||||    
T  46745204 gttgatatggacaatgtataatatatgcaaggtacgaggatcgaactctggccacca 46745260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 48251955 - 48251923
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||| ||||||||||||||||||||||||||||    
T  48251955 gttgatatgaacaatgtataatatatgcaaggt 48251923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 56497654 - 56497610
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    |||||| | |||||| |||||||||||||||| ||||||||||||    
T  56497654 ttggtaaggacaatgcataatatatgcaaggtctggggttcgaat 56497610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 6160715 - 6160659
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  6160715 gttggtatggacaatgtataatatatgcaaggt-tggagttcgaatcctgaccaccac 6160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 9444971 - 9445028
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| | |||||||||    
T  9444971 gttggtatgaacaatgtataaaatatgcaaggttcagggttcgaatcccgaccaccac 9445028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9111061 - 9111105
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||    
T  9111061 gttggtatgaacaatgcataatatatgcaaggtccggggttcgaa 9111105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9665325 - 9665381
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||| ||||||||||| |||||  |||||||||| || |||||||||    
T  9665325 ttggtatgaacaatatataatatatgtaaggtccggggttcgaactccgaccaccac 9665381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 20744152 - 20744193
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  20744152 gttggtatggacaatgcataatatatgcaaggtctggggttc 20744193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 21029401 - 21029356
Alignment:
Q  30 aatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||| ||||||||||||||||  ||||||| |||||||||||||||    
T  21029401 aatgcataatatatgcaaggttcggggttcaaattctgaccaccac 21029356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 26548269 - 26548306
Alignment:
Q  22 gtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    |||||||||||||||||||||||||||||  |||||||    
T  26548269 gtatgaacaatgtataatatatgcaaggttcggggttc 26548306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2726464 - 2726420
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||||| |||||| ||||||||||||||||  ||||||||||    
T  2726464 gttggtatggacaatgcataatatatgcaaggtccggggttcgaa 2726420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9977072 - 9977128
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||| | |||| |||||||||||||||| |||||||| ||  |||||||||||    
T  9977072 ttggtatggataatgcataatatatgcaaggtctggggttcaaaccctgaccaccac 9977128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 12215768 - 12215808
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    ||||||||||||||| ||||||||||||||||  |||||||    
T  12215768 ttggtatgaacaatgcataatatatgcaaggtccggggttc 12215808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 12700468 - 12700436
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  12700468 gttggtatgaacaatgcataatatatgcaaggt 12700436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 12808891 - 12808927
Alignment:
Q  26 gaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||| |||||||||||||||| |||||||||||    
T  12808891 gaacaatgcataatatatgcaaggtctggggttcgaa 12808927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 21598971 - 21599011
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggtt 58  Q
    |||||||||||||||  ||||||||||||||||| ||||||    
T  21598971 gttggtatgaacaatacataatatatgcaaggtacggggtt 21599011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 28951413 - 28951445
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  28951413 gttggtatgaacaatgcataatatatgcaaggt 28951445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 33938726 - 33938694
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  33938726 gttggtatgaacaatgcataatatatgcaaggt 33938694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 11647211 - 11647268
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||| | |||||| |||||||||||||||| |||||||||||| |||||||||||    
T  11647211 gttggtaaggacaatgcataatatatgcaaggtttggggttcgaatcctgaccaccac 11647268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 31708193 - 31708149
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||| |||||||||||||||| |||||||||||    
T  31708193 gttggtatgaacaatgcataatatatgcaaggtctggggttcgaa 31708149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 18999962 - 19000020
Alignment:
Q  17 tgttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||| ||||||| ||||||||||| ||||| |||||||| || ||||||||||||    
T  18999962 tgttggtaggaacaatatataatatatgtaaggtttggggttcaaactctgaccaccac 19000020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 27903127 - 27903183
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccacca 74  Q
    |||||||||||||||| ||||||||||||||||  ||||||| || || ||||||||    
T  27903127 gttggtatgaacaatgcataatatatgcaaggttcggggttcaaactccgaccacca 27903183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 781887 - 781934
Alignment:
Q  28 acaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||||| ||||||||||| |||||||||||  |||||||||||    
T  781887 acaatgtataaaatatgcaaggtctggggttcgaaccctgaccaccac 781934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 29225158 - 29225107
Alignment:
Q  23 tatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccacca 74  Q
    |||| ||||||||||||||||| ||||| || ||||||||| ||||||||||    
T  29225158 tatggacaatgtataatatatgtaaggtttgaggttcgaatcctgaccacca 29225107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 10199033 - 10199090
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||| |||||| |||||||||  ||||| |||||||||||| | |||||||||    
T  10199033 gttggtatggacaatgcataatatatataaggtgtggggttcgaatcccgaccaccac 10199090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 16579421 - 16579364
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||| ||||||||||||||||  | ||||| ||  |||||||||||    
T  16579421 gttggtatgaacaatgcataatatatgcaaggtccgtggttcaaaccctgaccaccac 16579364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 32737882 - 32737826
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||| ||||||||||||||||||| || ||||||||||| || | |||||||    
T  32737882 gttggtatga-caatgtataatatatgcaaagtctggggttcgaactccggccaccac 32737826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 37932344 - 37932401
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||| |||||| ||||||||||||||||  ||||||||||  ||| |||||||    
T  37932344 gttggtatggacaatgcataatatatgcaaggtccggggttcgaaccctggccaccac 37932401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 13796349 - 13796401
Alignment:
Q  23 tatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||||| |||||||||||||||| |||||| | || || |||||||||    
T  13796349 tatgaacaatgcataatatatgcaaggtctggggtacaaactccgaccaccac 13796401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 18589914 - 18589882
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  18589914 gttggtatgaacaatgcataatatatgcaaggt 18589882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 31602872 - 31602840
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  31602872 gttggtatgaacaatgcataatatatgcaaggt 31602840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 33645736 - 33645704
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||||| |||||||||||||||||||||||    
T  33645736 gttggtatggacaatgtataatatatgcaaggt 33645704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36162936 - 36162896
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggtt 58  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  36162936 gttggtatgaacaatgcataatatatgtaaggtctggggtt 36162896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 27432248 - 27432305
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||| | |||||||    
T  27432248 gttggtatgtacaatgcataatatatgtaaggtatggggttcgaattccggccaccac 27432305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 52575961 - 52576018
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||| | |||||||||    
T  52575961 gttggtatgaacaatgcataaaatatgcaaggtctggggttcgaatcccgaccaccac 52576018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 7938738 - 7938783
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    |||||||||||||||| ||||||||| |||||| ||||||||||||    
T  7938738 gttggtatgaacaatgcataatatatacaaggtctggggttcgaat 7938783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28430612 - 28430555
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||| |||||||| |||||||||||||||| || ||||| || ||||||||||||    
T  28430612 gttggtacgaacaatgcataatatatgcaaggtctgaggttcaaactctgaccaccac 28430555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 38894051 - 38894108
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||| |||||||||||||||| |||||||||||  ||||||||||||  |||||||||    
T  38894051 gttgatatgaacaatgtataaaatatgcaaggtccggggttcgaatttcgaccaccac 38894108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 53996313 - 53996358
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||    
T  53996313 gttggtatggacaatgcataatatatgcaaggtctggggttcgaat 53996358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 21914118 - 21914074
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| | |||||| ||||||||||||||||||||||||||||    
T  21914118 gttggtaaggacaatgcataatatatgcaaggtatggggttcgaa 21914074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 8139729 - 8139776
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattc 65  Q
    ||||||||| |||||| |||||||||||||||| || |||||||||||    
T  8139729 gttggtatggacaatgcataatatatgcaaggtctgaggttcgaattc 8139776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 10440708 - 10440755
Alignment:
Q  28 acaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||| ||||||||||||||||| | ||||||||||| |||||||||    
T  10440708 acaatgcataatatatgcaaggtacgaggttcgaattccgaccaccac 10440755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 22486697 - 22486743
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaatt 64  Q
    ||||||| |||||||| |||||||||||||| | |||||||||||||    
T  22486697 gttggtaagaacaatgcataatatatgcaagatttggggttcgaatt 22486743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 35548335 - 35548305
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaag 48  Q
    |||||||||||||||||||||||||||||||    
T  35548335 gttggtatgaacaatgtataatatatgcaag 35548305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 42074119 - 42074161
Alignment:
Q  20 tggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||| |||||||||||||||| || ||||||||    
T  42074119 tggtatgaacaatgcataatatatgcaaggtctgaggttcgaa 42074161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8942031 - 8942087
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||| ||||||||||||| || | || ||||||| |||||||||||    
T  8942031 gttggtatgaacaatgcataatatatgcaaagtct-ggattcgaatcctgaccaccac 8942087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 9856152 - 9856095
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||| ||||||||| ||||||||| ||||||  || |||||||| |||||||||||    
T  9856152 gttggtttgaacaatgcataatatattcaaggttcggagttcgaatcctgaccaccac 9856095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 25441547 - 25441506
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  25441547 gttggtatggacaatgcataatatatgcaaggtctggggttc 25441506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 39408299 - 39408266
Alignment:
Q  30 aatgtataatatatgcaaggtatggggttcgaat 63  Q
    ||||||||||||||||||||| ||||||||||||    
T  39408299 aatgtataatatatgcaaggtctggggttcgaat 39408266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6901501 - 6901469
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||| |||||||||||||||||||||||||    
T  6901501 gttggtaggaacaatgtataatatatgcaaggt 6901469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 19939088 - 19939044
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| |||||||| |||||||||| ||||| |||||||||||    
T  19939088 gttggtaagaacaatgcataatatatgaaaggtctggggttcgaa 19939044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 21549052 - 21549096
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||    
T  21549052 gttgatatggacaatgtataatatatgcaaggtttagggttcgaa 21549096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 21925710 - 21925762
Alignment:
Q  23 tatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||| |||||| |||||||| ||||||| |||||||||||| | |||||||||    
T  21925710 tatggacaatgcataatataggcaaggtttggggttcgaatcccgaccaccac 21925762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 25902806 - 25902838
Alignment:
Q  30 aatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||||||||||||||||| |||||||||||    
T  25902806 aatgtataatatatgcaaggtctggggttcgaa 25902838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 27397659 - 27397627
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||||| |||||||||||||||||||||||    
T  27397659 gttggtatggacaatgtataatatatgcaaggt 27397627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 28244151 - 28244107
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||| |||| |||||||||||  ||||||||||    
T  28244151 gttggtatgaacaatgcataaaatatgcaaggtccggggttcgaa 28244107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 32303374 - 32303418
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||| |||||||| |||||||  ||||||||||    
T  32303374 gttggtatgaacaatgcataatatacgcaaggtccggggttcgaa 32303418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 35191864 - 35191820
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| | |||||| |||||||||||||||| |||||||||||    
T  35191864 gttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 35191820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 38898256 - 38898200
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccacca 74  Q
    ||||||| | ||||||||||||||||| ||||| | |||||||||| | ||||||||    
T  38898256 gttggtaaggacaatgtataatatatgtaaggtttagggttcgaatcccgaccacca 38898200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 43490464 - 43490432
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  43490464 gttggtatgaacaatgcataatatatgcaaggt 43490432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 54230146 - 54230102
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| | |||||| |||||||||||||||| |||||||||||    
T  54230146 gttggtaaggacaatgcataatatatgcaaggtttggggttcgaa 54230102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 16580846 - 16580801
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  16580846 gttggtatggacaatgtataatatatgcaaggtctggggttcgaat 16580801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 52434615 - 52434662
Alignment:
Q  28 acaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  52434615 acaatgtataaaatatgcaaggtctggggttcaaattctgaccaccac 52434662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28832218 - 28832161
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||| |||||||||||||||| || ||||| ||| | |||||||||    
T  28832218 gttggtatgaacaatgcataatatatgcaaggtctgaggttcaaatcccgaccaccac 28832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 39949826 - 39949883
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||| |||||||| ||||||||| |||||| |||||||||||| | |||||||||    
T  39949826 gttggtaagaacaatgcataatatatacaaggtctggggttcgaatcccgaccaccac 39949883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 45701342 - 45701399
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||| |||| ||||| ||||| ||| |||||||||| |||||||||    
T  45701342 gttggtatgaacaatgcataaaatatgtaaggtctggagttcgaattccgaccaccac 45701399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 34766874 - 34766918
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||||    
T  34766874 gttggtatggacaatgtataatacatgcaaggtctggggttcgaa 34766918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 30937499 - 30937533
Alignment:
Q  28 acaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||||||||||||||||||| |||||||||||    
T  30937499 acaatgtataatatatgcaaggtctggggttcgaa 30937533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 32560987 - 32561041
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccac 72  Q
    ||||||||| |||||||||||||||||||||||  ||||||| ||| | ||||||    
T  32560987 gttggtatggacaatgtataatatatgcaaggtccggggttcaaatcccgaccac 32561041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 11410641 - 11410698
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||  |||| ||||| ||||| |||||||||||| | |||||||||    
T  11410641 gttggtatgaacaatacataaaatatgtaaggtctggggttcgaatcccgaccaccac 11410698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 28455390 - 28455345
Alignment:
Q  28 acaatgtataatatatgcaaggtatggggttcgaattctgaccacc 73  Q
    |||||| ||||||||||||| || |||||||||||||| |||||||    
T  28455390 acaatgcataatatatgcaaagtttggggttcgaattccgaccacc 28455345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 32944750 - 32944807
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||| |||||| ||||||||||||| || |||||||||||  | |||||||||    
T  32944750 gttggtatggacaatgcataatatatgcaacgtctggggttcgaaccccgaccaccac 32944807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 10132491 - 10132447
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| | |||||| |||||||||||||||| |||||||||||    
T  10132491 gttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 10132447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 15382866 - 15382834
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||| ||||||||||||||||||||||||||||    
T  15382866 gttgatatgaacaatgtataatatatgcaaggt 15382834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 38862121 - 38862173
Alignment:
Q  23 tatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||| |||||| |||| ||||||||||| ||||||||||| |||||| |||||    
T  38862121 tatggacaatgcataaaatatgcaaggtctggggttcgaactctgactaccac 38862173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 48681980 - 48681948
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  48681980 gttggtatgaacaatgcataatatatgcaaggt 48681948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9522926 - 9522970
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||| |||||||||||||||| |||||||||||    
T  9522926 gttggtatgaacaatgcataatatatgcaaggtttggggttcgaa 9522970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31292816 - 31292759
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||| || | |||||||    
T  31292816 gttggtatgaacaatgcataatacatgcaaggtctggggttcgaactccggccaccac 31292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 41029286 - 41029342
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccacca 74  Q
    ||||||| | |||||||||||||||||||||||  ||||||||||| | ||||||||    
T  41029286 gttggtaaggacaatgtataatatatgcaaggtccggggttcgaatcccgaccacca 41029342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 10555390 - 10555360
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaag 48  Q
    |||||||||||||||||||||||||||||||    
T  10555390 gttggtatgaacaatgtataatatatgcaag 10555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 5041353 - 5041394
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  5041353 gttggtatggacaatgcataatatatgcaaggtctggggttc 5041394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 30296347 - 30296388
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    ||||||| | ||||||||||||||||||||||| ||||||||    
T  30296347 gttggtaaggacaatgtataatatatgcaaggtctggggttc 30296388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34773245 - 34773302
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||| | |||||| ||||||||||||||||||| ||||  || ||||||||||||    
T  34773245 gttggtagggacaatgcataatatatgcaaggtatgaggtttaaactctgaccaccac 34773302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 37624557 - 37624602
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    ||||||||| |||||| ||||||||||||||||  |||||||||||    
T  37624557 gttggtatggacaatgcataatatatgcaaggtcgggggttcgaat 37624602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 6565540 - 6565580
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    ||||||||||||||| |||| ||||||||||| ||||||||    
T  6565540 ttggtatgaacaatgcataaaatatgcaaggtctggggttc 6565580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 7872795 - 7872751
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| | |||||| |||||||||||||||| |||||||||||    
T  7872795 gttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 7872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21136845 - 21136877
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||||| |||||||||||||||||||||||    
T  21136845 gttggtatggacaatgtataatatatgcaaggt 21136877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 25106074 - 25106106
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||||||||||| |||||||||||||||||    
T  25106074 gttggtatgaacaatatataatatatgcaaggt 25106106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 25674378 - 25674410
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggta 51  Q
    |||||||||||||||||||||||||| ||||||    
T  25674378 ttggtatgaacaatgtataatatatgtaaggta 25674410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 38553832 - 38553876
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| |||||||| |||||||||| ||||| |||||||||||    
T  38553832 gttggtaagaacaatgcataatatatgtaaggtttggggttcgaa 38553876  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 46659442 - 46659410
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||||| |||||||||||||||||||||||    
T  46659442 gttggtatggacaatgtataatatatgcaaggt 46659410  T

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Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 14233 - 14192
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  14233 gttggtatgaacaatgcataatatatgcaaggtatgtggttc 14192  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 6579328 - 6579283
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||||    
T  6579328 gttggtaagaacaatgcataatatatgcaaggtctggggttcgaat 6579283  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 2256985 - 2257029
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  2256985 gttggtatggacaatgcataatatatgcaaggtctggggttcgaa 2257029  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 35727451 - 35727495
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||    
T  35727451 gttggtaagaacaatgcataatatatgcaaggtttggggttcgaa 35727495  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 10560382 - 10560339
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||||||| |||||||||||  ||||||||||    
T  10560382 ttggtatgaacaatgtataaaatatgcaaggtcaggggttcgaa 10560339  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 13196714 - 13196757
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcga 61  Q
    |||||||||||||||| ||||||||||||||||  |||||||||    
T  13196714 gttggtatgaacaatgcataatatatgcaaggttcggggttcga 13196757  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 231640 - 231583
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||| |||||  |||||||||||||||| || ||||||||| |||| ||||||    
T  231640 gttggtatggacaatacataatatatgcaaggtttgaggttcgaatcctgatcaccac 231583  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7350560 - 7350617
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    ||||||||| |||||| ||||||||||||| || | |||||| ||| |||||||||||    
T  7350560 gttggtatggacaatgcataatatatgcaaagtctagggttcaaatcctgaccaccac 7350617  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 16221393 - 16221348
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    |||||||||||||||| |||| |||||||||||  |||||||||||    
T  16221393 gttggtatgaacaatgcataaaatatgcaaggttcggggttcgaat 16221348  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 18782587 - 18782531
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||||  ||||||| |||||||||||||||| ||||||||| || |||||||||||    
T  18782587 gttggtagaaacaatgcataatatatgcaaggtctggggttcg-atcctgaccaccac 18782531  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 23407065 - 23407008
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaattctgaccaccac 75  Q
    |||||| || |||||| |||||||||||||||| |||||||| ||  |||||||||||    
T  23407065 gttggtttggacaatgcataatatatgcaaggtctggggttcaaaccctgaccaccac 23407008  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 833116 - 833076
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggtt 58  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  833116 gttggtatggacaatgcataatatatgcaaggtctggggtt 833076  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 9383256 - 9383216
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggtt 58  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  9383256 gttggtatggacaatgcataatatatgcaaggtttggggtt 9383216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 20455906 - 20455950
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    |||||||| |||||| ||||||||||||||||  |||||||||||    
T  20455906 ttggtatggacaatgcataatatatgcaaggtccggggttcgaat 20455950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 25192220 - 25192188
Alignment:
Q  30 aatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||||||||||| ||||||||    
T  25192220 aatgtataatatatgcaaggtatgaggttcgaa 25192188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 25274876 - 25274832
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    ||||||| |||||||| |||||||||| ||||| |||||||||||    
T  25274876 gttggtaagaacaatgcataatatatgtaaggtctggggttcgaa 25274832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 29979963 - 29979931
Alignment:
Q  26 gaacaatgtataatatatgcaaggtatggggtt 58  Q
    |||||||| ||||||||||||||||||||||||    
T  29979963 gaacaatgcataatatatgcaaggtatggggtt 29979931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 32957590 - 32957550
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggtt 58  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  32957590 gttggtatgaacaatgcataatatatgtaaggtttggggtt 32957550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 33966335 - 33966367
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  33966335 gttggtatgaacaatgcataatatatgcaaggt 33966367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41668669 - 41668713
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaa 62  Q
    |||||||||||||||| ||||||||||||| || ||| |||||||    
T  41668669 gttggtatgaacaatgcataatatatgcaaagtctggcgttcgaa 41668713  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 122906 - 122946
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  122906 ttggtatgaacaatgcataatatatgcaaggtctggggttc 122946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 134693 - 134650
Alignment:
Q  26 gaacaatgtataatatatgcaaggtatggggttcgaattctgac 69  Q
    |||||||||||||||||||||||||  |||||||||| ||||||    
T  134693 gaacaatgtataatatatgcaaggttcggggttcgaactctgac 134650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 37549 - 37594
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggtatggggttcgaat 63  Q
    |||||||||||||||| |||| |||||||||||  |||||||||||    
T  37549 gttggtatgaacaatgcataaaatatgcaaggtccggggttcgaat 37594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 15976 - 15936
Alignment:
Q  19 ttggtatgaacaatgtataatatatgcaaggtatggggttc 59  Q
    |||||| | ||||||||||||||||||||||| ||||||||    
T  15976 ttggtaaggacaatgtataatatatgcaaggtctggggttc 15936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 56798 - 56830
Alignment:
Q  18 gttggtatgaacaatgtataatatatgcaaggt 50  Q
    ||||||||| |||||||||||||||||||||||    
T  56798 gttggtatggacaatgtataatatatgcaaggt 56830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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