View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_70 (Length: 237)
Name: NF14404_low_70
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_70 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 5569924 - 5569720
Alignment:
| Q |
18 |
gacagcaacacagtacgacatggagatggtccagtgcagcatattaatcctaacatacaacaggatatggacctttaacaaggaatccatgaatatgata |
117 |
Q |
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| T |
5569924 |
gacagcaacacagtacgacatggagatggtccagtgcagcatattaatcctaacatacaacaggatatggacctttaacaaggaatctatgaatatttaa |
5569825 |
T |
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| Q |
118 |
agagggcaacaaaggttcctttcacaccagttctttcaaagaaacaaacactgtaattgaagcaagtccaggttctt-ggaagccgtcgtatcgaacccg |
216 |
Q |
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| T |
5569824 |
agagggcaacaaaggttcctttcacaccagttctttcaaagaaacaaatacagtaattgaagcaagtccaggttcttgggaagccgtcgtatcgaacccg |
5569725 |
T |
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| Q |
217 |
ttctg |
221 |
Q |
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||||| |
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| T |
5569724 |
ttctg |
5569720 |
T |
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Target: scaffold0236 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 5827 - 5967
Alignment:
| Q |
24 |
aacacagtacgacatggagatggtccagtgcagcatattaatcctaacatacaacaggatatggacctttaacaaggaatccatgaatatgataagaggg |
123 |
Q |
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| T |
5827 |
aacacaatacgacatggcgatggtctagtacagcatattaatcctaacatacaacatgatatggacctttggcaaagaatatgtgagtatgataaaggaa |
5926 |
T |
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| Q |
124 |
caacaaaggttcctttcacaccagttctttcaaagaaacaa |
164 |
Q |
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| T |
5927 |
cagcggaggtttctttcactccagttctttcaaataaacaa |
5967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 2631089 - 2631277
Alignment:
| Q |
36 |
catggagatggtccagtgcagca---tattaatcctaacatacaacaggatatggacctttaacaaggaatccatgaatatgataagagggcaacaaagg |
132 |
Q |
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| T |
2631089 |
catggagatggtctagtgcagcaacatattcatcctaacttacaacaagatatggacctttggcatagaatccgtgagtatgataagagggcagcgtagg |
2631188 |
T |
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| Q |
133 |
ttcctttcacaccagttctttcaaagaaacaaacactgtaattgaagcaagtccaggttctt-ggaagccgtcgtatcgaacccgttct |
220 |
Q |
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| T |
2631189 |
tgtctttcacactagttctttcgaagaaacataaacataaattgaaacaagcccaagtgcttcggaagtcgccgtatctaacccgttct |
2631277 |
T |
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