View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_73 (Length: 236)
Name: NF14404_low_73
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 6861561 - 6861357
Alignment:
| Q |
18 |
acatagggcacaaggaggaggatgctgagtcatgtacctatgagtgtgacatagatgatatgtatggcttggttaaggaagatgacaatgataaagggtc |
117 |
Q |
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| T |
6861561 |
acatagggcacaaggaggaggatgctgagtcatgtacctatgagtgtgacatagatgatatgtatgacttggttaaggaagatgacaatgataaagggtc |
6861462 |
T |
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| Q |
118 |
acatgaattttgttgtgttgatt------gtagctgctctagctctaccatgtggctgtcagatgcagccttggaaatagagtgttcatcttcaccttta |
211 |
Q |
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| T |
6861461 |
acatgaattttgttgtgttgattgtagttgtagctgctctagctctaccatgtggctgtcagatgcagccttggaaatagagtgttcatcttcaccttta |
6861362 |
T |
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| Q |
212 |
cttgt |
216 |
Q |
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| T |
6861361 |
cttgt |
6861357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 6854777 - 6854599
Alignment:
| Q |
23 |
gggcacaaggaggaggatgctgagtcatgtacctatgagtgtgacatagatgatatgtatggcttggttaaggaagatgacaatgataaagggtcacatg |
122 |
Q |
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||||| ||||| || |||||||||||||| |||||||||||||||| |||| ||||| | || | ||||||||| |||| |||||||||||||| || |
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| T |
6854777 |
gggcataaggaagatgatgctgagtcatgcacctatgagtgtgacaacgatggtatgtgtagcatagttaaggaaaatgaagatgataaagggtcaggtg |
6854678 |
T |
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| Q |
123 |
aattttgttgtgttgattgtagctgctctagctctaccatgtggctgtcagatgcagccttggaaatagagtgttcatcttcacctttacttgt |
216 |
Q |
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| T |
6854677 |
aattttgctgtttt---------------agctctaccatgtggttatcagatgcaaccatggaaatagaatgttcatcttcacctttacttgt |
6854599 |
T |
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