View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_78 (Length: 227)
Name: NF14404_low_78
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_78 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 36783486 - 36783265
Alignment:
| Q |
6 |
agctagtactggaaattaaattaagcttaattgacctctggaaacttttcaccaattttttgggttattactttccatgaattctttgataaaatataaa |
105 |
Q |
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| T |
36783486 |
agctagtactggaaattaaattaagcttaattgacctctggaaacttttcaccaattttttgggttattactttccatgaattctttaataaaatataaa |
36783387 |
T |
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| Q |
106 |
ggttgaaaagaaagcgtagtatttgacctatatatttcaattgagtacaactatatattagttcattcatgaaagtgtacgtgatgccatgcatagtagt |
205 |
Q |
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| T |
36783386 |
ggttgaaaataaagcgtagtatttgacctatatatttcaattgagtacaactatatattagttcattcatgaaagtgtacgtgatgccatgcatagtagt |
36783287 |
T |
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| Q |
206 |
ggctctatattggtatttaata |
227 |
Q |
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| T |
36783286 |
ggctctatattggtatttaata |
36783265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 36791631 - 36791581
Alignment:
| Q |
9 |
tagtactggaaattaaattaagcttaattgacctctggaaacttttcacca |
59 |
Q |
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| T |
36791631 |
tagtactggaaattaaattaagcttaattgacctctaaaaacttttcacca |
36791581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 36791573 - 36791527
Alignment:
| Q |
126 |
atttgacctatatatttcaattgagtacaactatatattagttcatt |
172 |
Q |
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| T |
36791573 |
atttgacctatatacttcaattgagtgcaactatatattagttcatt |
36791527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 36753227 - 36753184
Alignment:
| Q |
159 |
tatattagttcattcatgaaagtgtacgtgatgccatgcatagt |
202 |
Q |
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| T |
36753227 |
tatattaattcattcatgaaaatgtacgtgatgccatgcatagt |
36753184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 36770945 - 36770900
Alignment:
| Q |
17 |
gaaattaaattaagcttaattgacctctggaaacttttcaccaatt |
62 |
Q |
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| T |
36770945 |
gaaattaaattaaccttaattgacctcttgaaaattttcaccaatt |
36770900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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