View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_79 (Length: 227)
Name: NF14404_low_79
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 45893247 - 45893457
Alignment:
| Q |
1 |
tagcaattgcaagaaaaaatactggaccgattgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccacttgaa |
100 |
Q |
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| T |
45893247 |
tagcaattgcaagaaaaaatactggaccgattgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccacttgaa |
45893346 |
T |
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| Q |
101 |
gcttgggtctaaaatttatattacaagtcaccaattataatttagaacatgtatttgatcattaacaaaattttaaaaatcaaatgattataatttcatc |
200 |
Q |
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| T |
45893347 |
gcttgggtctaaaatttatattacaagtcaccaattataatttagaacatgtatttgatcattaacaaaattttaaaaatcaaatgattataatttcatc |
45893446 |
T |
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| Q |
201 |
taagtcgctat |
211 |
Q |
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||||||||||| |
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| T |
45893447 |
taagtcgctat |
45893457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 12980512 - 12980350
Alignment:
| Q |
1 |
tagcaattgcaagaaaaaatactggaccgattgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccacttgaa |
100 |
Q |
| |
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||||| |||||||||||||| |||||| ||||||||||| | |||| |||| || ||||||||| |||||||| |||||||||||||||||||| |
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| T |
12980512 |
tagcagttgcaagaaaaaatgttggacccattgatccaactgtagagaaaggagcaattcctgggtgcgggaattccttgaaaaacacattccacttgaa |
12980413 |
T |
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| Q |
101 |
gcttgggtctaaaatttatatta-caagtcaccaattataatttagaacatgtatttgatcattaa |
165 |
Q |
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|| ||||||| ||| | || | |||| || |||||| ||||||||||||| |||| |||||||| |
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| T |
12980412 |
gcctgggtctgaaa---aaatcatcaagccatcaattagaatttagaacatggatttcatcattaa |
12980350 |
T |
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