View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_8 (Length: 570)
Name: NF14404_low_8
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 33954379 - 33954854
Alignment:
| Q |
18 |
acttcattataagggattgcacatcctgctttgtctactttatctggtgttactttgtgaagttcaatgatgtatggcaaacaaccaacaggaccagtat |
117 |
Q |
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| T |
33954379 |
acttcattataagggattgcgcatcctgctttgtctactttatctgatgttactttgtgaagttcaatgatgtatggcaaacaaccaacaggaccagtat |
33954478 |
T |
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| Q |
118 |
tgtgaatccaaaatgatcttcctccatgagcatatatattctatacatcaatggcaacatttagacaaacatgtatgttatgttacacattagcttaatt |
217 |
Q |
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| T |
33954479 |
tgtgaatccaaaatgatcttcctccatgagcatatatattctatacatcaatagcaacatttagacaaacatgtatgttatgttacacattagcttaatt |
33954578 |
T |
|
| Q |
218 |
gctacaactataatttctttatagcaattgcatcaaaaatcaaaatggattattaccttgattgtggtcttgaattgatcaagaacatcaggaacatatg |
317 |
Q |
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| T |
33954579 |
gctacaactataatttctttatagcaattgcatcaaaaatcaaaatggattattaccttgattgtgttcttgaattgatccagaacatcaggaacatatg |
33954678 |
T |
|
| Q |
318 |
ctttaacttgatttatggacatgttgtggaagtaaccggatgccaagtcattttgaccaatatcaaatgtgtataatgctcgagaaaaatattctgcttt |
417 |
Q |
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| T |
33954679 |
ctttaacttgatttatggacatgttgtggaagtaaccggatgccaagtcattttgaccaatatcaaatgtgtataatgctcgagaaaaatattctgcttt |
33954778 |
T |
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| Q |
418 |
tggtaacaatgttttgtatattccacctaagaggaaaaatattgatggcttgttaaggtgaattgttcacatctta |
493 |
Q |
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| T |
33954779 |
tggtaacaatgttttgtatattccacctaagaggaaaaatattgatggcttgttaaggtgaattgttcacatctta |
33954854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 33954877 - 33954924
Alignment:
| Q |
515 |
ctcgatatccgatccaagaaccgagtatatgcattgacattacctttg |
562 |
Q |
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| T |
33954877 |
ctcgatatccgatccaagaaccgagtatatgcattgacattacctttg |
33954924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 10485472 - 10485420
Alignment:
| Q |
365 |
tcattttgaccaatatcaaatgtgtataatgctcgagaaaaatattctgcttt |
417 |
Q |
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| T |
10485472 |
tcattttgaccaatatcaaatgtgtacaaggctttggaaaaatattcttcttt |
10485420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 393
Target Start/End: Complemental strand, 10502804 - 10502776
Alignment:
| Q |
365 |
tcattttgaccaatatcaaatgtgtataa |
393 |
Q |
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| T |
10502804 |
tcattttgaccaatatcaaatgtgtataa |
10502776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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