View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14404_low_83 (Length: 215)
Name: NF14404_low_83
Description: NF14404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14404_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 54889580 - 54889398
Alignment:
| Q |
18 |
ggttgttgcagttactacaactacgaagcctgtggaagcgctagaattgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatg |
117 |
Q |
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| T |
54889580 |
ggttgttgcagttactacaactacgaaacctgtggaagcgctagaattgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatg |
54889481 |
T |
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| Q |
118 |
ccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaagctcacatacctttg |
200 |
Q |
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| T |
54889480 |
ccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaagctcacatacctttg |
54889398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 54905629 - 54905447
Alignment:
| Q |
18 |
ggttgttgcagttactacaactacgaagcctgtggaagcgctagaattgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatg |
117 |
Q |
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| T |
54905629 |
ggttgttgcagttactacaactacgaaacctgtggaagcgctagaattgttgagagaaaagaaggatatgtttgacctagtaattagtgatgttagcatg |
54905530 |
T |
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| Q |
118 |
ccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaagctcacatacctttg |
200 |
Q |
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| T |
54905529 |
ccagacatggatggcttcaagctccttgagcaagttggacttgaaatggatttacctttcatcagtaagctcacacacctttg |
54905447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 54895203 - 54895023
Alignment:
| Q |
18 |
ggttgttgcagttactacaactacgaagcctgtggaagcgctagaattgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatg |
117 |
Q |
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| T |
54895203 |
ggttgttgcagttactacaactacgaagtcagtggaagcgcttgaattgttgagggaaaagagaagcatgtttgatcttataattagtgatgtaaacatg |
54895104 |
T |
|
| Q |
118 |
ccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaagctcacatacctt |
198 |
Q |
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| T |
54895103 |
ccagaaatggatggtttcaagctccttgagcaagttggacttgagatggacctgcctttcattagtaagctaacaaacctt |
54895023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 49061287 - 49061166
Alignment:
| Q |
65 |
tgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttggacttgaaat |
164 |
Q |
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| T |
49061287 |
tgttgagagaaaacaaagacaagtttgacctggtaatcagtgatgtacacatgccggacatggatggatttaagctgcttgaacttgtgggacttgaaat |
49061188 |
T |
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| Q |
165 |
agacctacccttcatcagtaag |
186 |
Q |
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||||| ||| |||| |||||| |
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| T |
49061187 |
ggaccttcccgtcataagtaag |
49061166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 2904663 - 2904734
Alignment:
| Q |
115 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaag |
186 |
Q |
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| T |
2904663 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaag |
2904734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 2893155 - 2893226
Alignment:
| Q |
115 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaag |
186 |
Q |
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| T |
2893155 |
atgccagacatggacggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaag |
2893226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 48870519 - 48870461
Alignment:
| Q |
115 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacc |
173 |
Q |
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| T |
48870519 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacc |
48870461 |
T |
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