View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14405_high_1 (Length: 393)
Name: NF14405_high_1
Description: NF14405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14405_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 14212164 - 14211807
Alignment:
| Q |
21 |
ccgcgaagaaagttctaagatgaaattgcaaacattagaaaaatgtggtgaagagtatattgtagacactgcatcgattttcgagagtttaattagttca |
120 |
Q |
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| T |
14212164 |
ccgcgaagaaagttctaagatgaaattgcaaacattagaaaaatgtggtgaagagtatattgtagacactgcatcgatttttgagagtttaatcagttca |
14212065 |
T |
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| Q |
121 |
tcaggaactaattatggttcattaaaggatgtgattttggatgaactactaatagtgatctcaacttcaaaagaggaaaaggaactaagaacttcagtat |
220 |
Q |
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| T |
14212064 |
tcaggaactaattatggttcattaaaggatgtgattttggatgaactacttatagtgatctcaacttcgaaagaggaaaaggaactaagaacatcagtat |
14211965 |
T |
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| Q |
221 |
caattctaacaacaataatttcaaggaacaagtcaattatagaagatgtgaagaaaaaaggtttaaggttatgtgatttagcaagcgccctaaaacaaaa |
320 |
Q |
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| T |
14211964 |
caattctaacaacaataatttcaaggaacaagtcaattatagaagatgtgaagaaaaaaggtttaaggttatgtgatttagcaagtgccctaaaacaaaa |
14211865 |
T |
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| Q |
321 |
tattcatgaagcagcaattctaatctatttaatagatccatctcctatagatataaat |
378 |
Q |
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| T |
14211864 |
tgttcatgaagcagcaattctaatctatttaatatatccatctcctatagatataaat |
14211807 |
T |
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