View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14405_high_12 (Length: 232)

Name: NF14405_high_12
Description: NF14405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14405_high_12
NF14405_high_12
[»] chr8 (9 HSPs)
chr8 (1-232)||(6262386-6262617)
chr8 (42-177)||(6449888-6450023)
chr8 (102-175)||(6456357-6456430)
chr8 (78-154)||(6390101-6390177)
chr8 (36-154)||(6331014-6331132)
chr8 (93-154)||(6320552-6320613)
chr8 (68-154)||(6273673-6273759)
chr8 (36-154)||(6351462-6351580)
chr8 (66-154)||(6369119-6369207)
[»] chr5 (1 HSPs)
chr5 (41-163)||(9605992-9606114)
[»] chr2 (2 HSPs)
chr2 (54-169)||(42689358-42689473)
chr2 (94-170)||(42692374-42692450)
[»] chr1 (1 HSPs)
chr1 (96-177)||(36926126-36926207)
[»] chr3 (1 HSPs)
chr3 (102-163)||(36745682-36745743)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 6262617 - 6262386
Alignment:
Q  1 aatatatttaacccgtataattattgtgctcttgtttatttagaggaatagcagttgcggattcatcttcccctcacggtcttcgtctactcatagagga 100  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262617 aatatatttaaccagtataattattgtgatcttgtttatttaggggaatagcagttgcggattcatcttcccctcacggtcttcgtctactcatagagga 6262518  T
Q  101 ttacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctccatatacttcacatcagctgaaaaaattcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6262517 ttacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctccatatacttcacatcagatgaaaaaattcag 6262418  T
Q  201 caggactatgaactgcaatcttggtggaaaga 232  Q
    ||||||| |||||| |||||||||||||||||    
T  6262417 caggactctgaactccaatcttggtggaaaga 6262386  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 6450023 - 6449888
Alignment:
Q  42 agaggaatagcagttgcggattcatcttcccctcacggtcttcgtctactcatagaggattacccttatgctgttgatggacttgacatttgggatgcta 141  Q
    |||||| |||| |||| |||| | |||||||||||||| ||||| ||  | |||||||| ||||||||||||||||||||||| || || ||||||||||    
T  6450023 agaggattagctgttgaggatccctcttcccctcacggccttcgacttgtgatagaggactacccttatgctgttgatggactagaaatatgggatgcta 6449924  T
Q  142 ttaagacatgggtacaagactacgtctccatatact 177  Q
    ||||| ||||||| |||||||| |||||| ||||||    
T  6449923 ttaaggcatgggtccaagactatgtctccttatact 6449888  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 6456430 - 6456357
Alignment:
Q  102 tacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctccatata 175  Q
    ||||||||||||||||||||||| || || ||||||||||||||| ||||||| |||||||| |||||| ||||    
T  6456430 tacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggttcaagactatgtctccttata 6456357  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 6390177 - 6390101
Alignment:
Q  78 ggtcttcgtctactcatagaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggt 154  Q
    ||||| ||||| || ||||||||||| || ||||||||||||||||| || || |||| |||||||||| |||||||    
T  6390177 ggtctgcgtcttctgatagaggattatccatatgctgttgatggactagagatatgggctgctattaagtcatgggt 6390101  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 6331132 - 6331014
Alignment:
Q  36 ttatttagaggaatagcagttgcggattcatcttcccctcacggtcttcgtctactcatagaggattacccttatgctgttgatggacttgacatttggg 135  Q
    |||| ||||||| | || |||| |||| || ||||||| || ||  |||| || || |||||||| ||||||||||||| ||||||||| || || ||||    
T  6331132 ttatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagatatggg 6331033  T
Q  136 atgctattaagacatgggt 154  Q
    ||||||| ||| |||||||    
T  6331032 atgctatcaagtcatgggt 6331014  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 6320613 - 6320552
Alignment:
Q  93 atagaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggt 154  Q
    |||||||| ||||||||||||| ||||||||| || || ||||||||||| ||| |||||||    
T  6320613 atagaggactacccttatgctgctgatggactagagatatgggatgctatcaagtcatgggt 6320552  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 6273759 - 6273673
Alignment:
Q  68 ttcccctcacggtcttcgtctactcatagaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggt 154  Q
    |||||| ||||| ||||| || || |||||||| ||||||||||||| ||||||| | || || |||| || ||||||| |||||||    
T  6273759 ttccccacacggccttcgccttctgatagaggactacccttatgctgctgatggattagagatatgggctgttattaagtcatgggt 6273673  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 6351580 - 6351462
Alignment:
Q  36 ttatttagaggaatagcagttgcggattcatcttcccctcacggtcttcgtctactcatagaggattacccttatgctgttgatggacttgacatttggg 135  Q
    |||||||||||| |||| |||| |||| || | || |||  |||||| || || || ||||||||||| |||||||||  ||||||||| || || ||||    
T  6351580 ttatttagaggagtagctgttgaggatccagcctctcctaccggtctccgccttctgatagaggattatccttatgcttctgatggactagaaatatggg 6351481  T
Q  136 atgctattaagacatgggt 154  Q
     ||| |||||| |||||||    
T  6351480 ctgccattaagtcatgggt 6351462  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 6369207 - 6369119
Alignment:
Q  66 tcttcccctcacggtcttcgtctactcatagaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggt 154  Q
    |||||||| || ||||| ||||| || ||||||||||| || ||||||   |||||||| || || |||| |||||||||| |||||||    
T  6369207 tcttccccacatggtctgcgtcttctgatagaggattatccatatgcttcagatggactagagatatgggctgctattaagtcatgggt 6369119  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 9605992 - 9606114
Alignment:
Q  41 tagaggaatagcagttgcggattcatcttcccctcacggtcttcgtctactcatagaggattacccttatgctgttgatggacttgacatttgggatgct 140  Q
    ||||||| |||| |||| |||| |||| || || || || ||||||||  | || ||||| ||||||||||| ||||||||||| || || |||||||||    
T  9605992 tagaggattagccgttgaggatccatcgtctccacatggccttcgtcttgtgatcgaggactacccttatgcagttgatggactcgagatatgggatgct 9606091  T
Q  141 attaagacatgggtacaagacta 163  Q
    |||||| ||||||| ||||||||    
T  9606092 attaagtcatgggtccaagacta 9606114  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 42689358 - 42689473
Alignment:
Q  54 gttgcggattcatcttcccctcacggtcttcgtctactcatagaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatggg 153  Q
    |||| |||| |||| |||||  |||| |||||||| || |||||||| ||||||||||||||||||||| | || || |||    ||||||| |||||||    
T  42689358 gttgaggatccatcgtccccatacggacttcgtcttctgatagaggactacccttatgctgttgatggattagagatatggacaactattaaaacatggg 42689457  T
Q  154 tacaagactacgtctc 169  Q
    ||||||| || |||||    
T  42689458 tacaagattatgtctc 42689473  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 42692450 - 42692374
Alignment:
Q  94 tagaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctcc 170  Q
    ||||||||||||||||||||  ||||||| | || || |||| ||| || ||||||||||| |||||||| ||||||    
T  42692450 tagaggattacccttatgctcatgatggattagagatatgggctgcaataaagacatgggttcaagactatgtctcc 42692374  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 36926126 - 36926207
Alignment:
Q  96 gaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctccatatact 177  Q
    ||||||||||||||||| ||||||||||| || ||||||  ||| || |||||||||||  ||||||||  |||||| ||||    
T  36926126 gaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttact 36926207  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 36745682 - 36745743
Alignment:
Q  102 tacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagacta 163  Q
    ||||||| ||||||||||||| | || || ||||||||||||||| |||||||  |||||||    
T  36745682 tacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagacta 36745743  T

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